LXL04_017470 | RubberDandelionOmics

Gene overview

LXL04_017470

Reference: OH-1004 Chr: Chr03 Coordinates: 149805878-149807444 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1494 bp · LXL04_017470|LXL04_017470|OH1004|cDNA

ATGATCGGTGGTGGCAATGGCGGTACCGGCGGATCCAAGAAGCGGCACCGTGTCGGAAGCAACAGCCGTCTATCATCCACCGCGTCGCTGATCGATTCCTCTCGTCCCGACATAACCCTAACTGAAGGGTCTCACAAACCCTTACCAACGTCATCCATCCGCCGGTCTAATTCCCGTCATTCGTTCCTCCCTGTGGCACCGTCCGTCCCCAATGGATTCAATGACCCTATCACCGCTGACGTCATCCTCCGTCTCTATCT...

CDS

Download CDS FASTA

1494 bp · LXL04_017470|LXL04_017470|OH1004|CDS

ATGATCGGTGGTGGCAATGGCGGTACCGGCGGATCCAAGAAGCGGCACCGTGTCGGAAGCAACAGCCGTCTATCATCCACCGCGTCGCTGATCGATTCCTCTCGTCCCGACATAACCCTAACTGAAGGGTCTCACAAACCCTTACCAACGTCATCCATCCGCCGGTCTAATTCCCGTCATTCGTTCCTCCCTGTGGCACCGTCCGTCCCCAATGGATTCAATGACCCTATCACCGCTGACGTCATCCTCCGTCTCTATCT...

Protein

Download Protein FASTA

497 aa · LXL04_017470|LXL04_017470|OH1004|PROTEIN

MIGGGNGGTGGSKKRHRVGSNSRLSSTASLIDSSRPDITLTEGSHKPLPTSSIRRSNSRHSFLPVAPSVPNGFNDPITADVILRLYLDQSSPFDSDDSESAVAIDSTTEFEIYLHSSVLRRSKYFSALLSDRWKKESGEVDYYKFNLAVTAGSINNHVTVLQLLYINEISSTIDTASKALELLPIALELLFEDCVTACVRYLEAVPWTEEEELIVLSLIPLLRDEESLELLARVSPPKSDLSEEMLHGLILTAIHNHPNM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017470`
TK1151 ID	TkA02G042190
OH-1004 ID	LXL04_017470
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 34.608 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017470

Location Chr03:149805878-149807444 (+)

Description Similar to At1g63850: BTB/POZ domain-containing protein At1g63850

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63850`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At3g05675`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g60050`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At2g13690`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At3g50780`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017470 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G63850

ath:AT2G13690

ath:AT3G05675

ath:AT3G50780

ath:AT5G60050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510

Rank 1 · LXL04_017470 · OH-1004

Nucleus0.395

Rank 2 · LXL04_017470 · OH-1004

Cell membrane0.143

Rank 3 · LXL04_017470 · OH-1004

Golgi apparatus0.074

Rank 4 · LXL04_017470 · OH-1004

Lysosome / Vacuole0.070

Rank 5 · LXL04_017470 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25553.2BTB-POZ_ANK-like288-485 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017470	`PF25553.2`	BTB-POZ_ANK-like	288	485	3e-10	40.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9CAJ9`	Arabidopsis thaliana	BTB/POZ domain-containing protein At1g63850	24.722%	Swiss-Prot	weak database homology
`Q8RX01`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g05675	24.324%	Swiss-Prot	weak database homology
`Q9LVG9`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g60050	22.704%	Swiss-Prot	weak database homology
`Q9SKH2`	Arabidopsis thaliana	BTB/POZ domain-containing protein At2g13690	23.585%	Swiss-Prot	weak database homology
`Q9SVM0`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g50780	25.562%	Swiss-Prot	weak database homology

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