Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2289 bp · LXL04_017464|LXL04_017464|OH1004|cDNA
ATGGATATCGACTTCTCGGAGTACCGATTACGGTGTCAGCTTCGAGGTCACGAAGACGACGTTCGTGGTATATGTGTATGCGACAACGTTGGAATAGCAACTTCATCAAGAGACCGAACCATTAGGTTATGGTCTTTGGATCAGAGTAACAGCTCTTCGTATACCTCATCAAAGATACTACTTGGGCATACTAGTTTTGTTGGACCACTCGCATGGGTTTCCCCTAATGAACAGTTCCCAGAAGGTGCTCTTATATCTGG...
2289 bp · LXL04_017464|LXL04_017464|OH1004|CDS
ATGGATATCGACTTCTCGGAGTACCGATTACGGTGTCAGCTTCGAGGTCACGAAGACGACGTTCGTGGTATATGTGTATGCGACAACGTTGGAATAGCAACTTCATCAAGAGACCGAACCATTAGGTTATGGTCTTTGGATCAGAGTAACAGCTCTTCGTATACCTCATCAAAGATACTACTTGGGCATACTAGTTTTGTTGGACCACTCGCATGGGTTTCCCCTAATGAACAGTTCCCAGAAGGTGCTCTTATATCTGG...
Protein
Download Protein FASTA762 aa · LXL04_017464|LXL04_017464|OH1004|PROTEIN
MDIDFSEYRLRCQLRGHEDDVRGICVCDNVGIATSSRDRTIRLWSLDQSNSSSYTSSKILLGHTSFVGPLAWVSPNEQFPEGALISGGMDTLVLVWDLATGEKVQTLKGHKMQVTGVTSDGSDIITSSVDCTLRRWKGEHQVEVWEAHKAPIQAVRTLPSGELITGSTDTTIKLWKGSKCTHTFSGHTDTVRGLAIMPDLGILSASHDGTIRLWAVTGEVLLEMVGHTAIVYSVDAHKSGLVVSGSEDGLAKIWKDGVCV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017464 |
|---|---|
| TK1151 ID | TkA02G042430 |
| OH-1004 ID | LXL04_017464 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017464 |
|---|---|
| Location | Chr03:149746097-149751767 (-) |
| Description | Similar to PLAA: Phospholipase A-2-activating protein |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006281 DNA repair Biological Process GO:0006644 phospholipid metabolic process Biological Process GO:0007165 signal transduction Biological Process GO:0010992 ubiquitin recycling Biological Process GO:0016236 macroautophagy Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Biological Process GO:0043335 protein unfolding Biological Process GO:0071222 cellular response to lipopolysaccharide Biological Process GO:1900045 negative regulation of protein K63-linked ubiquitination Biological Process GO:0000153 cytoplasmic ubiquitin ligase complex Cellular Component GO:0005634 nucleus Cellular Component |
| KEGG gene cross-reference | hsa:9373 mmu:18786 rno:116645 spo:2541208 xla:443698 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24807.2WD40_CDC20-Fz2-175 aaPF25175.2Beta-prop_WDR56-138 aaPF25391.2WD40_Gbeta7-136 aaPF25173.2Beta-prop_WDR3_1st9-50 aaPF25047.1Beta-prop_TEP1_2nd11-153 aaPF00400.39WD4012-45 aaPF25172.2Beta-prop_WDR3_2nd14-220 aaPF25168.2Beta-prop_WDR36-Utp21_2nd15-165 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017464 | PF24807.2 | WD40_CDC20-Fz | 2 | 175 | 6.2e-16 | 59.3 |
| LXL04_017464 | PF25175.2 | Beta-prop_WDR5 | 6 | 138 | 3e-44 | 152.2 |
| LXL04_017464 | PF25391.2 | WD40_Gbeta | 7 | 136 | 1.3e-19 | 71.1 |
| LXL04_017464 | PF25173.2 | Beta-prop_WDR3_1st | 9 | 50 | 3.4e-40 | 138.4 |
| LXL04_017464 | PF25047.1 | Beta-prop_TEP1_2nd | 11 | 153 | 8.8e-23 | 81.5 |
| LXL04_017464 | PF00400.39 | WD40 | 12 | 45 | 4e-44 | 147.9 |
| LXL04_017464 | PF25172.2 | Beta-prop_WDR3_2nd | 14 | 220 | 4.1e-22 | 79.5 |
| LXL04_017464 | PF25168.2 | Beta-prop_WDR36-Utp21_2nd | 15 | 165 | 3.4e-14 | 53.6 |
| LXL04_017464 | PF23409.2 | Beta-prop_EML | 16 | 216 | 1.3e-09 | 38.7 |
| LXL04_017464 | PF25174.2 | Beta-prop_THOC3 | 27 | 136 | 6.8e-32 | 111.3 |
| LXL04_017464 | PF24017.3 | Beta-prop_SCAP | 32 | 136 | 1e-15 | 58.3 |
| LXL04_017464 | PF24105.2 | Beta-prop_CAF1B_HIR1 | 48 | 153 | 8.1e-17 | 62.0 |
| LXL04_017464 | PF25173.2 | Beta-prop_WDR3_1st | 56 | 176 | 3.4e-40 | 138.4 |
| LXL04_017464 | PF25174.2 | Beta-prop_THOC3 | 83 | 143 | 6.8e-32 | 111.3 |
| LXL04_017464 | PF24814.2 | WD40_Prp19 | 83 | 164 | 9.4e-29 | 101.1 |
| LXL04_017464 | PF24817.2 | WD40_WDHD1_1st | 83 | 143 | 5.2e-21 | 75.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.