LXL04_017430 | RubberDandelionOmics

Gene overview

LXL04_017430

Reference: OH-1004 Chr: Chr03 Coordinates: 148851887-148854081 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1456 bp · LXL04_017430|LXL04_017430|OH1004|cDNA

ACGTACCTCCGGTGGACCAATGAAGATCGCATTTCTTCTCTCGATCCATTTCTGCCTCCTGGTTCTCTCCCATTGCTATGGTGGCAACGGATATGATCCTCTCGAGAGCATTTTAAACATCCAACGTTCTAAAAGATCGGATCATATCATTACCAAAGAGCTAACATCCGAGATCTCATACTCACCGGTATATGTGGGCCCTCAAGACGGGTTGAAGGATTTGGATAAGATATCATCTTTGCCGGGTGAACCATCGGGAA...

CDS

Download CDS FASTA

1437 bp · LXL04_017430|LXL04_017430|OH1004|CDS

ATGAAGATCGCATTTCTTCTCTCGATCCATTTCTGCCTCCTGGTTCTCTCCCATTGCTATGGTGGCAACGGATATGATCCTCTCGAGAGCATTTTAAACATCCAACGTTCTAAAAGATCGGATCATATCATTACCAAAGAGCTAACATCCGAGATCTCATACTCACCGGTATATGTGGGCCCTCAAGACGGGTTGAAGGATTTGGATAAGATATCATCTTTGCCGGGTGAACCATCGGGAACTGACTTTGACCAGTATTC...

Protein

Download Protein FASTA

478 aa · LXL04_017430|LXL04_017430|OH1004|PROTEIN

MKIAFLLSIHFCLLVLSHCYGGNGYDPLESILNIQRSKRSDHIITKELTSEISYSPVYVGPQDGLKDLDKISSLPGEPSGTDFDQYSGYVTVDPNHGRALFYYLAESPIFSSNNPLVLWLNGGPGCSSFGNGAMMELGPFRVNADSVTLSRNKYAWNNVANVLFLESPAGVGFSYSNTSSDYTTGDIQTAKDSYTFLVNWLERFPEYKTRDFYITGESYAGHYVPQLAQLILQNNKIANQTIINLKGIALGNAYVDEETE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017430`
TK1151 ID	TkA02G044630
OH-1004 ID	LXL04_017430
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_017430

Location Chr03:148851887-148854081 (+)

Description Similar to SCP1: Serine carboxypeptidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63470`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g24010`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g07990`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017430 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005773 vacuole Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G24010

ath:AT3G07990

ath:AT3G63470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.496

Rank 1 · LXL04_017430 · OH-1004

Extracellular0.255

Rank 2 · LXL04_017430 · OH-1004

Cytoplasm0.111

Rank 3 · LXL04_017430 · OH-1004

Endoplasmic reticulum0.098

Rank 4 · LXL04_017430 · OH-1004

Cell membrane0.058

Rank 5 · LXL04_017430 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1079-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017430	`PF00450.29`	Peptidase_S10	79	474	2.2e-140	469.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WRX3`	Arabidopsis thaliana	Serine carboxypeptidase-like 40	51.529%	Swiss-Prot	strong database homology
`O82229`	Arabidopsis thaliana	Putative serine carboxypeptidase-like 23	50.118%	Swiss-Prot	strong database homology
`Q9SFB5`	Arabidopsis thaliana	Serine carboxypeptidase-like 27	49.764%	Swiss-Prot	moderate database homology

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