LXL04_017348 | RubberDandelionOmics

Gene overview

LXL04_017348

Reference: OH-1004 Chr: Chr03 Coordinates: 147018940-147021180 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1518 bp · LXL04_017348|LXL04_017348|OH1004|cDNA

ATGGGTGTGGAGGGAAAGAAACAGACGACATTGGGCGATGATCAGAGCGCTACAGATAAGAAATCAAACCCAAAGCTCACTTTACTACCTCTAATCGCCCTAATTTTCTACGAAGTCTCCGGCGGTCCATTTGGGGTAGAAGATTCAGTCAAATCCGGAGGCGGAGCTCTACTTTCGTTATTAGGGTTCTTAATTTTCCCCATTTTCTGGAGCATCCCGGAAGCATTAATCACAGCGGAGCTCGCCACAAGCTTCCCCGA...

CDS

Download CDS FASTA

1518 bp · LXL04_017348|LXL04_017348|OH1004|CDS

ATGGGTGTGGAGGGAAAGAAACAGACGACATTGGGCGATGATCAGAGCGCTACAGATAAGAAATCAAACCCAAAGCTCACTTTACTACCTCTAATCGCCCTAATTTTCTACGAAGTCTCCGGCGGTCCATTTGGGGTAGAAGATTCAGTCAAATCCGGAGGCGGAGCTCTACTTTCGTTATTAGGGTTCTTAATTTTCCCCATTTTCTGGAGCATCCCGGAAGCATTAATCACAGCGGAGCTCGCCACAAGCTTCCCCGA...

Protein

Download Protein FASTA

505 aa · LXL04_017348|LXL04_017348|OH1004|PROTEIN

MGVEGKKQTTLGDDQSATDKKSNPKLTLLPLIALIFYEVSGGPFGVEDSVKSGGGALLSLLGFLIFPIFWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFLDYLKQSLPIFDELYARIPTLLAITILLTYLNYRGLHIVGFSAVLLASFSLLPFLVMGVLSIPKIRPRRWVTLDLKKVQWRGYFNNMFWNLNYWDKASTLAGEVEDPSRTFPKALYGAVIVVVCSYLIPLLAGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017348`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017348

Location Chr03:147018940-147021180 (+)

Description Similar to At3g19553: Probable polyamine transporter At3g19553

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19553`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`At1g31830`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`At5g05630`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis.2012 · DOI: 10.1073/pnas.1121406109

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0700500`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	Functional analysis of OsPUT1, a rice polyamine uptake transporter.2012 · DOI: 10.1007/s00425-011-1486-9
`UniProt: A2X8M8`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017348 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0015839 cadaverine transport Biological Process

GO:0015846 polyamine transport Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015203 polyamine transmembrane transporter activity Molecular Function

GO:0015293 symporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G31830

ath:AT3G19553

ath:AT5G05630

dosa:Os02g0700500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.398

Rank 1 · LXL04_017348 · OH-1004

Lysosome / Vacuole0.323

Rank 2 · LXL04_017348 · OH-1004

Endoplasmic reticulum0.129

Rank 3 · LXL04_017348 · OH-1004

Cytoplasm0.108

Rank 4 · LXL04_017348 · OH-1004

Golgi apparatus0.093

Rank 5 · LXL04_017348 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13520.13AA_permease_227-412 aa

PF00324.28AA_permease52-419 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017348	`PF13520.13`	AA_permease_2	27	412	4.1e-32	112.3
LXL04_017348	`PF00324.28`	AA_permease	52	419	2.5e-16	60.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LH39`	Arabidopsis thaliana	Probable polyamine transporter At3g19553	73.109%	Swiss-Prot	strong database homology
`Q9C6S5`	Arabidopsis thaliana	Probable polyamine transporter At1g31830	55.414%	Swiss-Prot	strong database homology
`Q9FFL1`	Arabidopsis thaliana	Polyamine transporter RMV1	55.705%	Swiss-Prot	strong database homology
`Q6Z8D0`	Oryza sativa subsp. japonica	Polyamine transporter PUT1	54.803%	Swiss-Prot	strong database homology
`A2X8M8`	Oryza sativa subsp. indica	Polyamine transporter PUT1	54.803%	Swiss-Prot	strong database homology

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