LXL04_017321 | RubberDandelionOmics

Gene overview

LXL04_017321

Reference: OH-1004 Chr: Chr03 Coordinates: 146411528-146415042 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1746 bp · LXL04_017321|LXL04_017321|OH1004|cDNA

ATGAAGATCCAGTCATTGTGCTATGTGTTTTGCTTTTTCTTGATTTCAGGAATGGTAGCACACGCAACACCATATGATTACAGTTTTACCACTGAGTGCTTAGAGAACCCAATTAATCCTCAATATGATGGAGGAATAGTCGTGAACCCGGAGCTAAAAGATGGGCTAAGTGGATGGGTTTCTTTCGGAAATGCAAAATTAGAAGTAAGAAAATCCGAAACTGGAAATGATTTTATTGTTGCTTATCAACGAAATCAATC...

CDS

Download CDS FASTA

1746 bp · LXL04_017321|LXL04_017321|OH1004|CDS

ATGAAGATCCAGTCATTGTGCTATGTGTTTTGCTTTTTCTTGATTTCAGGAATGGTAGCACACGCAACACCATATGATTACAGTTTTACCACTGAGTGCTTAGAGAACCCAATTAATCCTCAATATGATGGAGGAATAGTCGTGAACCCGGAGCTAAAAGATGGGCTAAGTGGATGGGTTTCTTTCGGAAATGCAAAATTAGAAGTAAGAAAATCCGAAACTGGAAATGATTTTATTGTTGCTTATCAACGAAATCAATC...

Protein

Download Protein FASTA

581 aa · LXL04_017321|LXL04_017321|OH1004|PROTEIN

MKIQSLCYVFCFFLISGMVAHATPYDYSFTTECLENPINPQYDGGIVVNPELKDGLSGWVSFGNAKLEVRKSETGNDFIVAYQRNQSFDSASQEFFMDQEKLYTFSAWVQVNPDQDDGTVVATFKTATGFFYDAGSTKAKSGCWSMLKGGLTVNESGPAQLYFQSENPSVDIWVDSVSLQPFTKEEWESHRYQSIEKVRKSKVKIQAVDGEDKPLANKNITIVQKFARFPFGCAINNNILNNQAYKNWFTSRFKYTTFEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017321`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017321

Location Chr03:146411528-146415042 (+)

Description Similar to At4g33820: Endo-1,4-beta-xylanase 5-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33820`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At4g33810`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At2g14690`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At1g58370`	Binds to and hydrolyzes insoluble and soluble xylan substrates (By similarity).	A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome.2002 · DOI: 10.1093/pcp/pcf088
`At1g10050`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017321 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045493 xylan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0031176 endo-1,4-beta-xylanase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10050

ath:AT1G58370

ath:AT2G14690

ath:AT4G33810

ath:AT4G33820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.428

Rank 1 · LXL04_017321 · OH-1004

Lysosome / Vacuole0.144

Rank 2 · LXL04_017321 · OH-1004

Cell membrane0.098

Rank 3 · LXL04_017321 · OH-1004

Endoplasmic reticulum0.088

Rank 4 · LXL04_017321 · OH-1004

Plastid0.079

Rank 5 · LXL04_017321 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00331.27Glyco_hydro_10228-481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017321	`PF00331.27`	Glyco_hydro_10	228	481	6.5e-40	138.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84WT5`	Arabidopsis thaliana	Endo-1,4-beta-xylanase 5-like	38.628%	Swiss-Prot	moderate database homology
`A0A1P8B8F8`	Arabidopsis thaliana	Endo-1,4-beta-xylanase 5	38.208%	Swiss-Prot	moderate database homology
`Q680B7`	Arabidopsis thaliana	Endo-1,4-beta-xylanase 4	35.649%	Swiss-Prot	moderate database homology
`A0A1P8AWH8`	Arabidopsis thaliana	Endo-1,4-beta-xylanase 1	28.936%	Swiss-Prot	weak database homology
`O80596`	Arabidopsis thaliana	Endo-1,4-beta-xylanase 2	29.185%	Swiss-Prot	weak database homology

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