Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1707 bp · LXL04_017273|LXL04_017273|OH1004|cDNA
ATGGTGGTTGTTTCCAGCCGTTTCGTCAATCCCGCCGTTCTTCCTGATTCCGGTTCCAATTCCACCACGATGATGAATCTCCATTGTAATTCAACCGCCTCTTCTTCTTTGACATACGTCGGTTCTCGGCTTCGCGTCAATTTTAAGCCAGTTAGTGTTAGGACATTGAGTTCCAATAGAAGATCAGGATGCGTAAACCTAAAATGCGAGATGGCGTCGGTATCGGATTCAGACTCCAGATCGGTATCCGTATCGAATTC...
1707 bp · LXL04_017273|LXL04_017273|OH1004|CDS
ATGGTGGTTGTTTCCAGCCGTTTCGTCAATCCCGCCGTTCTTCCTGATTCCGGTTCCAATTCCACCACGATGATGAATCTCCATTGTAATTCAACCGCCTCTTCTTCTTTGACATACGTCGGTTCTCGGCTTCGCGTCAATTTTAAGCCAGTTAGTGTTAGGACATTGAGTTCCAATAGAAGATCAGGATGCGTAAACCTAAAATGCGAGATGGCGTCGGTATCGGATTCAGACTCCAGATCGGTATCCGTATCGAATTC...
Protein
Download Protein FASTA568 aa · LXL04_017273|LXL04_017273|OH1004|PROTEIN
MVVVSSRFVNPAVLPDSGSNSTTMMNLHCNSTASSSLTYVGSRLRVNFKPVSVRTLSSNRRSGCVNLKCEMASVSDSDSRSVSVSNSSSFSAFELLKTSAAERYTKEKSGIMVVGLSFHTAPVEIREKLSIPQAELPQAITELCALNHIEEAAVLSTCNRMEIYAVALSQHRGLKEITEWMSKVPTILSLIVIWYLISGVPISDIRQHQFILHEKEATKHLFEVSSGLDSLILGEGQILSQVKDVVKSSQGVPGFDRKIS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017273 |
|---|---|
| TK1151 ID | TkA02G061090 |
| OH-1004 ID | LXL04_017273 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017273 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:144775401-144777596 (+) | |||||||||
| Description | Similar to HEMA1: Glutamyl-tRNA reductase 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006779 porphyrin-containing compound biosynthetic process Biological Process GO:0006782 protoporphyrinogen IX biosynthetic process Biological Process GO:0006783 heme biosynthetic process Biological Process GO:0006979 response to oxidative stress Biological Process GO:0009416 response to light stimulus Biological Process GO:0015995 chlorophyll biosynthetic process Biological Process GO:0033014 tetrapyrrole biosynthetic process Biological Process GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0031969 chloroplast membrane Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0008883 glutamyl-tRNA reductase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ag:CAA63140 ath:AT1G09940 ath:AT1G58290 csv:101208135 csv:101220615 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05201.21GlutR_N114-277 aaPF01488.27Shikimate_DH292-430 aaPF03807.24F420_oxidored309-405 aaPF00745.26GlutR_dimer444-548 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017273 | PF05201.21 | GlutR_N | 114 | 277 | 1.5e-47 | 161.9 |
| LXL04_017273 | PF01488.27 | Shikimate_DH | 292 | 430 | 7.3e-39 | 133.7 |
| LXL04_017273 | PF03807.24 | F420_oxidored | 309 | 405 | 5.1e-08 | 34.1 |
| LXL04_017273 | PF00745.26 | GlutR_dimer | 444 | 548 | 1e-26 | 93.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.