LXL04_017085 | RubberDandelionOmics

Gene overview

LXL04_017085

Reference: OH-1004 Chr: Chr03 Coordinates: 140877838-140881068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2148 bp · LXL04_017085|LXL04_017085|OH1004|cDNA

ATGTCCGCCAACGCCAGTGATTGCAATCAACCCTCGACCTCCTCTTCCACAGATGGTTCACAACCATGTCGCCGGTTTGAATTTACCGAGATTCTCTCAGCGACCGACAACTTTAACGAATCATTAGTAGTTGGGCATGGAGGATTTGGAAAAGTTTACAAAGGTAAAATTCTCAATGGATCCACTCTTATTGTTGCCGCCATCAAACGATTGGATTCGATGTCCAATCAAGGGGAAGAAGAGTTCCGGGCGGAAGTTGA...

CDS

Download CDS FASTA

2148 bp · LXL04_017085|LXL04_017085|OH1004|CDS

ATGTCCGCCAACGCCAGTGATTGCAATCAACCCTCGACCTCCTCTTCCACAGATGGTTCACAACCATGTCGCCGGTTTGAATTTACCGAGATTCTCTCAGCGACCGACAACTTTAACGAATCATTAGTAGTTGGGCATGGAGGATTTGGAAAAGTTTACAAAGGTAAAATTCTCAATGGATCCACTCTTATTGTTGCCGCCATCAAACGATTGGATTCGATGTCCAATCAAGGGGAAGAAGAGTTCCGGGCGGAAGTTGA...

Protein

Download Protein FASTA

715 aa · LXL04_017085|LXL04_017085|OH1004|PROTEIN

MSANASDCNQPSTSSSTDGSQPCRRFEFTEILSATDNFNESLVVGHGGFGKVYKGKILNGSTLIVAAIKRLDSMSNQGEEEFRAEVEMLSKLRHSHLVSLFGYCNYETEKILLYEYMPNGTLEDHLHKLGTRLSWVQRLKICIGAARGLDYLHTGTGIETGVIHRDVKTSNILLHESWAAKISDFGLSRIAPTNQQSTYVNTLVKGTFGYFDPNYFATGRLTRKSDVYAFRVVLFEVLCRKRAVDKSLDDEQWGLVSWAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017085`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017085

Location Chr03:140877838-140881068 (+)

Description Similar to BAK1: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33430`	Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.	The BRI1-associated kinase 1, BAK1, has a brassinolide-independent role in plant cell-death control.2007 · DOI: 10.1016/j.cub.2007.05.046 BAK1 and BKK1 regulate brassinosteroid-dependent growth and brassinosteroid-independent cell-death pathways.2007 · DOI: 10.1016/j.cub.2007.05.036 Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216 Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.2009 · DOI: 10.1073/pnas.0810249106 Phosphorylation of receptor-like cytoplasmic kinases by bacterial flagellin.2010 · DOI: 10.4161/psb.11500 The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens.2011 · DOI: 10.1105/tpc.111.084301 Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005 Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1.2015 · DOI: 10.1105/tpc.15.00306 An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity.2015 · DOI: 10.1038/nplants.2015.140 The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana.2019 · DOI: 10.1093/jxb/ery454 The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes.2021 · DOI: 10.1038/s41467-021-25580-w
`At2g13790`	Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.	BAK1 and BKK1 regulate brassinosteroid-dependent growth and brassinosteroid-independent cell-death pathways.2007 · DOI: 10.1016/j.cub.2007.05.036 Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216 The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes.2021 · DOI: 10.1038/s41467-021-25580-w
`At1g34210`	Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways.	Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BB68`	LRR receptor kinase involved in defense response.	No verified direct reference in this release
`Os08g0174700`	LRR receptor kinase involved in defense response.	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield.2009 · DOI: 10.1111/j.1467-7652.2009.00444.x A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice.2011 · DOI: 10.1007/s10059-011-0178-4

Functional annotation source

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Functional annotation source: OH1004 · LXL04_017085 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005768 endosome Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010008 endosome membrane Cellular Component

GO:0032991 protein-containing complex Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G33430

dosa:Os08g0174700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.709

Rank 1 · LXL04_017085 · OH-1004

Cytoplasm0.238

Rank 2 · LXL04_017085 · OH-1004

Nucleus0.201

Rank 3 · LXL04_017085 · OH-1004

Endoplasmic reticulum0.038

Rank 4 · LXL04_017085 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_017085 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase42-314 aa

PF07714.24PK_Tyr_Ser-Thr43-313 aa

PF00069.32Pkinase399-667 aa

PF07714.24PK_Tyr_Ser-Thr401-669 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017085	`PF00069.32`	Pkinase	42	314	2e-78	264.1
LXL04_017085	`PF07714.24`	PK_Tyr_Ser-Thr	43	313	1.4e-83	280.9
LXL04_017085	`PF00069.32`	Pkinase	399	667	2e-78	264.1
LXL04_017085	`PF07714.24`	PK_Tyr_Ser-Thr	401	669	1.4e-83	280.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94F62`	Arabidopsis thaliana	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	68.536%	Swiss-Prot	weak database homology
`Q9SKG5`	Arabidopsis thaliana	Somatic embryogenesis receptor kinase 4	66.049%	Swiss-Prot	weak database homology
`Q9XIC7`	Arabidopsis thaliana	Somatic embryogenesis receptor kinase 2	66.978%	Swiss-Prot	weak database homology
`B8BB68`	Oryza sativa subsp. indica	LRR receptor kinase BAK1	67.183%	Swiss-Prot	weak database homology
`Q6Z4U4`	Oryza sativa subsp. japonica	LRR receptor kinase BAK1	67.183%	Swiss-Prot	weak database homology

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