LXL04_016935 | RubberDandelionOmics

Gene overview

LXL04_016935

Reference: OH-1004 Chr: Chr03 Coordinates: 137225382-137228557 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1029 bp · LXL04_016935|LXL04_016935|OH1004|cDNA

ATGGTGCCCCAGGTCTGGAAGGATGCCTACAGGGGCATGTCCAGTGATAATATCAAGGGTTTGATTTTAGCATTGTCTTCTAGTTTGTTTATTGGTGCTAGCTTCATTGTTAAGAAAAAAGGTCTCATTAAAGCAGGCGCTTCTGGTACCAGGGCAGGAGTTGGAGGATACTCATACTTATTGGAGCCTCTATGGTGGGTAGGCATGACAACAATGATTGTTGGAGAGATAGCAAATTTTGCAGCTTATGCATTTGCACC...

CDS

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1029 bp · LXL04_016935|LXL04_016935|OH1004|CDS

ATGGTGCCCCAGGTCTGGAAGGATGCCTACAGGGGCATGTCCAGTGATAATATCAAGGGTTTGATTTTAGCATTGTCTTCTAGTTTGTTTATTGGTGCTAGCTTCATTGTTAAGAAAAAAGGTCTCATTAAAGCAGGCGCTTCTGGTACCAGGGCAGGAGTTGGAGGATACTCATACTTATTGGAGCCTCTATGGTGGGTAGGCATGACAACAATGATTGTTGGAGAGATAGCAAATTTTGCAGCTTATGCATTTGCACC...

Protein

Download Protein FASTA

342 aa · LXL04_016935|LXL04_016935|OH1004|PROTEIN

MVPQVWKDAYRGMSSDNIKGLILALSSSLFIGASFIVKKKGLIKAGASGTRAGVGGYSYLLEPLWWVGMTTMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAYIILREKLHIFGILGCALCVVGSTTIVLHAPQEQQIVSVTEVWDLATEPAFVLYAVLVLMAVFIIIFFYIPLYGHTHIMCYIGVCSLVGSLSVMSVKAVGIALKLTFSGVNQMVYPQTWAFTLIVLLCVITQMNYLNKALDTFNTAVVSPIYYT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016935`
TK1151 ID	TkA02G091480
OH-1004 ID	LXL04_016935
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.000
Protein coverage (%)	TK1151 100.000 / OH-1004 36.257 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016935

Location Chr03:137225382-137228557 (-)

Description Similar to At1g71900: Probable magnesium transporter NIPA4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71900`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At1g34470`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g09640`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g13800`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At2g21120`	Acts as a Mg(2+) transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016935 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015693 magnesium ion transport Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005769 early endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G34470

ath:AT1G71900

ath:AT2G21120

ath:AT4G09640

ath:AT4G13800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.450

Rank 1 · LXL04_016935 · OH-1004

Cytoplasm0.248

Rank 2 · LXL04_016935 · OH-1004

Cell membrane0.239

Rank 3 · LXL04_016935 · OH-1004

Golgi apparatus0.174

Rank 4 · LXL04_016935 · OH-1004

Endoplasmic reticulum0.103

Rank 5 · LXL04_016935 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05653.21Mg_trans_NIPA16-308 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016935	`PF05653.21`	Mg_trans_NIPA	16	308	3.1e-131	437.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94AH3`	Arabidopsis thaliana	Probable magnesium transporter NIPA4	80.000%	Swiss-Prot	strong database homology
`Q9LNK7`	Arabidopsis thaliana	Probable magnesium transporter NIPA3	78.824%	Swiss-Prot	strong database homology
`F4JKQ7`	Arabidopsis thaliana	Probable magnesium transporter NIPA5	76.369%	Swiss-Prot	strong database homology
`B3LFA3`	Arabidopsis thaliana	Probable magnesium transporter NIPA2	71.521%	Swiss-Prot	strong database homology
`Q8GWX2`	Arabidopsis thaliana	Probable magnesium transporter NIPA6	63.390%	Swiss-Prot	strong database homology

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