Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1917 bp · LXL04_016842|LXL04_016842|OH1004|cDNA
ATGTCGGAACCGGTCACTACCGGCCAGACAGACGATCAAGAAGTAGGAACGCCGGATAACATGGACGAAAGGAGTCCATCCGCGGCGGGGAAGCAAAAAACTGTTAGCCGTAAGGAGAAGCGGAAGGCGTTGAAGAAAGACAAGAGGAAGCAAATAAGGAAGGAGCTAGCTGCGAAAGCTCGCGAAGAGGAGGAAGCTCGTCTTAATGATCCCGAAGAGAAACGAAGGATTGAAATGGAAGAGGACAGGGAGAAAGAGAG...
1917 bp · LXL04_016842|LXL04_016842|OH1004|CDS
ATGTCGGAACCGGTCACTACCGGCCAGACAGACGATCAAGAAGTAGGAACGCCGGATAACATGGACGAAAGGAGTCCATCCGCGGCGGGGAAGCAAAAAACTGTTAGCCGTAAGGAGAAGCGGAAGGCGTTGAAGAAAGACAAGAGGAAGCAAATAAGGAAGGAGCTAGCTGCGAAAGCTCGCGAAGAGGAGGAAGCTCGTCTTAATGATCCCGAAGAGAAACGAAGGATTGAAATGGAAGAGGACAGGGAGAAAGAGAG...
Protein
Download Protein FASTA638 aa · LXL04_016842|LXL04_016842|OH1004|PROTEIN
MSEPVTTGQTDDQEVGTPDNMDERSPSAAGKQKTVSRKEKRKALKKDKRKQIRKELAAKAREEEEARLNDPEEKRRIEMEEDREKERLEKERKEFEERERIFLEELQRKKEEEEEEERKKAVERELKLKQEGTEEGADEDDEWEYIEEGPPEIIWQGNEIIVKKNKVKVKKKNIIQSIEKEDLDRPTSNPLPPQSEAYASFKNTPMASTDSLHTVAQQVPNFGTEQDKAHCPFYIKTGACRFGMRCNRVHYYPDKSTTLL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016842 |
|---|---|
| TK1151 ID | TkA02G098270 |
| OH-1004 ID | LXL04_016842 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 88.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016842 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:135417848-135422092 (-) | ||||||||||||
| Description | Similar to At1g10320: Zinc finger CCCH domain-containing protein 5 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000245 spliceosomal complex assembly Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0008380 RNA splicing Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005689 U12-type spliceosomal complex Cellular Component GO:0005730 nucleolus Cellular Component GO:0034693 U11/U12 snRNP Cellular Component GO:0089701 U2AF complex Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G10320 dosa:Os02g0557500 hsa:8233 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.