LXL04_016769 | RubberDandelionOmics

Gene overview

LXL04_016769

Reference: OH-1004 Chr: Chr03 Coordinates: 133320240-133321364 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · LXL04_016769|LXL04_016769|OH1004|cDNA

ATGGGATGCTGTTGTGAAGAAGAGGAAGATATCCTCCAACCACTCCATCATCAACAACAAACCACAGCCCTACACTCCTCATCCTCTTCCATGTCGTCCACAGTTTCCGGCGATGATTCACACACCACCATATCTCCGATGAATTCCAATTTTGCAGCTTTGCTCTGCAAAGATATCCTGCGTACGATCTTCGAAAAGCTTCCGGTGGTAGATCTAGCACGGTCCGCGTGTGTGTGCAGGTTGTGGAGCTCAGTGGCTTC...

CDS

Download CDS FASTA

807 bp · LXL04_016769|LXL04_016769|OH1004|CDS

ATGGGATGCTGTTGTGAAGAAGAGGAAGATATCCTCCAACCACTCCATCATCAACAACAAACCACAGCCCTACACTCCTCATCCTCTTCCATGTCGTCCACAGTTTCCGGCGATGATTCACACACCACCATATCTCCGATGAATTCCAATTTTGCAGCTTTGCTCTGCAAAGATATCCTGCGTACGATCTTCGAAAAGCTTCCGGTGGTAGATCTAGCACGGTCCGCGTGTGTGTGCAGGTTGTGGAGCTCAGTGGCTTC...

Protein

Download Protein FASTA

268 aa · LXL04_016769|LXL04_016769|OH1004|PROTEIN

MGCCCEEEEDILQPLHHQQQTTALHSSSSSMSSTVSGDDSHTTISPMNSNFAALLCKDILRTIFEKLPVVDLARSACVCRLWSSVASDREIQVNAFKAPWKLKSVIGNPTSGSFWRDNRLSRFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIHSRDRLLIPVSSPTLLINGTCYIELEAHAKREVAVLYLEGAPGKTITGVLSKLTSVSEEGKKRVIDSLRRSMQVDDSTAQYYLSLSNGDPRGALMEFSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016769`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016769

Location Chr03:133320240-133321364 (+)

Description Similar to At1g55000: F-box protein At1g55000

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55000`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016769 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

KEGG gene cross-reference

ath:AT1G55000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.632

Rank 1 · LXL04_016769 · OH-1004

Cytoplasm0.280

Rank 2 · LXL04_016769 · OH-1004

Cell membrane0.156

Rank 3 · LXL04_016769 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_016769 · OH-1004

Plastid0.032

Rank 5 · LXL04_016769 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box55-90 aa

PF12937.13F-box-like58-89 aa

PF01476.27LysM130-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016769	`PF00646.39`	F-box	55	90	2.1e-07	31.3
LXL04_016769	`PF12937.13`	F-box-like	58	89	5.6e-07	29.9
LXL04_016769	`PF01476.27`	LysM	130	170	4.3e-07	30.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ32`	Arabidopsis thaliana	F-box protein At1g55000	64.055%	Swiss-Prot	strong database homology

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