LXL04_016742 | RubberDandelionOmics

Gene overview

LXL04_016742

Reference: OH-1004 Chr: Chr03 Coordinates: 132563554-132564540 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

987 bp · LXL04_016742|LXL04_016742|OH1004|cDNA

ATGTTTAGTACTCCACTCACCTCCAAAACCCTCCATTTTCAAAATTCTTCAatcttagttgcaggtccaaGGGCAGAAATGGAATTTCACCATGAACATGgcgaagaagaaggagaagagaTGGCTCTCCCGATCAACAGCACATACGGGCACAATCACATTCTCCCGTTATCGCTTCATCAACCACCACCCGATCATATGTCCGCCATAACACCACCACCGGCGGCGCCGCCGCTGCCGCCGTCGTCGTCCATGGAGGA...

CDS

Download CDS FASTA

987 bp · LXL04_016742|LXL04_016742|OH1004|CDS

ATGTTTAGTACTCCACTCACCTCCAAAACCCTCCATTTTCAAAATTCTTCAATCTTAGTTGCAGGTCCAAGGGCAGAAATGGAATTTCACCATGAACATGGCGAAGAAGAAGGAGAAGAGATGGCTCTCCCGATCAACAGCACATACGGGCACAATCACATTCTCCCGTTATCGCTTCATCAACCACCACCCGATCATATGTCCGCCATAACACCACCACCGGCGGCGCCGCCGCTGCCGCCGTCGTCGTCCATGGAGGA...

Protein

Download Protein FASTA

328 aa · LXL04_016742|LXL04_016742|OH1004|PROTEIN

MFSTPLTSKTLHFQNSSILVAGPRAEMEFHHEHGEEEGEEMALPINSTYGHNHILPLSLHQPPPDHMSAITPPPAAPPLPPSSSMEEISKKMMVSVRYRECLKNHAASMGGKATDGCGEFMASGEEGTLEALTCAVCNCHRNFHRKEMEGDSPHHHHHRHHPIPTTSYDYINYHGAAPPHLKRLDLGNGRNLILQAHHHHPNGNGAGGGALVPYNKGMGMSGFRSESEEQEDRRASQMQQVVKKRFRTKFTQEQKEKMVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016742`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016742

Location Chr03:132563554-132564540 (-)

Description Similar to ZHD3: Zinc-finger homeodomain protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02540`	Putative transcription factor.	No verified direct reference in this release
`At1g14440`	Putative transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0466400`	Putative transcription factor.	No verified direct reference in this release
`UniProt: A2Z259`	Putative transcription factor.	No verified direct reference in this release
`Os08g0479400`	Putative transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016742 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0048574 long-day photoperiodism, flowering Biological Process

GO:0050793 regulation of developmental process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G14440

ath:AT2G02540

dosa:Os08g0479400

dosa:Os09g0466400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_016742 · OH-1004

Cytoplasm0.082

Rank 2 · LXL04_016742 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_016742 · OH-1004

Endoplasmic reticulum0.015

Rank 4 · LXL04_016742 · OH-1004

Plastid0.008

Rank 5 · LXL04_016742 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04770.18ZF-HD_dimer96-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016742	`PF04770.18`	ZF-HD_dimer	96	148	6.9e-30	103.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O64722`	Arabidopsis thaliana	Zinc-finger homeodomain protein 3	51.739%	Swiss-Prot	moderate database homology
`Q9M9S0`	Arabidopsis thaliana	Zinc-finger homeodomain protein 4	42.991%	Swiss-Prot	moderate database homology
`Q6YXH5`	Oryza sativa subsp. japonica	Zinc-finger homeodomain protein 1	40.625%	Swiss-Prot	moderate database homology
`A2Z259`	Oryza sativa subsp. indica	Zinc-finger homeodomain protein 1	40.625%	Swiss-Prot	moderate database homology
`Q6ZB90`	Oryza sativa subsp. japonica	Zinc-finger homeodomain protein 2	43.162%	Swiss-Prot	moderate database homology

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