LXL04_016646 | RubberDandelionOmics

Gene overview

LXL04_016646

Reference: OH-1004 Chr: Chr03 Coordinates: 130038979-130051607 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2124 bp · LXL04_016646|LXL04_016646|OH1004|cDNA

ATGGAGATCAGACTTCACAGATGCAGAAATCACAAAGCTATTGATAATTCAGGGGAATACGATATTAGAAAGGGACGAAGAGGAGGCCGAGAAGAAATTAGATTACCTGAAATAAGGATGCAGAATGCAGACTTCTCGCCATTGTTGATTCGATTTGAAGTTGATACAGAATGCTCTCTTCAAAACACCACTAACCGTCGCCTCCGTGCACCTCCTTCTCCGATGACACCACCACAaccaccacctccaccgccGCCCTC...

CDS

Download CDS FASTA

2124 bp · LXL04_016646|LXL04_016646|OH1004|CDS

ATGGAGATCAGACTTCACAGATGCAGAAATCACAAAGCTATTGATAATTCAGGGGAATACGATATTAGAAAGGGACGAAGAGGAGGCCGAGAAGAAATTAGATTACCTGAAATAAGGATGCAGAATGCAGACTTCTCGCCATTGTTGATTCGATTTGAAGTTGATACAGAATGCTCTCTTCAAAACACCACTAACCGTCGCCTCCGTGCACCTCCTTCTCCGATGACACCACCACAACCACCACCTCCACCGCCGCCCTC...

Protein

Download Protein FASTA

707 aa · LXL04_016646|LXL04_016646|OH1004|PROTEIN

MEIRLHRCRNHKAIDNSGEYDIRKGRRGGREEIRLPEIRMQNADFSPLLIRFEVDTECSLQNTTNRRLRAPPSPMTPPQPPPPPPPSSPLSTASKHISTSDSPSTSSATPSDTWNYVWIPFLISLCKHVSSAKASPESTVVLPSNSVSRLSSTCPTPDSKLNFRPIIGILSHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPPEILQSKLNLVNGVLFTGGWAKSGLYADVVEGIFKQVLKKNNEGDQF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016646`
TK1151 ID	TkA02G114960
OH-1004 ID	LXL04_016646
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.200
Protein coverage (%)	TK1151 87.687 / OH-1004 33.239 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016646

Location Chr03:130038979-130051607 (-)

Description Similar to GGH2: Gamma-glutamyl hydrolase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78680`	Cleaves the polyglutamate sidechains of folate polyglutamates in the vacuole.	A central role for gamma-glutamyl hydrolases in plant folate homeostasis.2010 · DOI: 10.1111/j.1365-313x.2010.04330.x
`At1g78660`	Cleaves the polyglutamate sidechains of folate polyglutamates in the vacuole.	No verified direct reference in this release
`At1g78670`	Cleaves the polyglutamate sidechains of folate polyglutamates in the vacuole.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016646 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0046900 tetrahydrofolylpolyglutamate metabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0008242 omega peptidase activity Molecular Function

GO:0034722 gamma-glutamyl-peptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G78660

ath:AT1G78670

ath:AT1G78680

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.196

Rank 1 · LXL04_016646 · OH-1004

Cell membrane0.167

Rank 2 · LXL04_016646 · OH-1004

Lysosome / Vacuole0.161

Rank 3 · LXL04_016646 · OH-1004

Cytoplasm0.149

Rank 4 · LXL04_016646 · OH-1004

Extracellular0.127

Rank 5 · LXL04_016646 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07722.20Peptidase_C26165-379 aa

PF00117.35GATase197-386 aa

PF10551.16MULE462-533 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016646	`PF07722.20`	Peptidase_C26	165	379	7.1e-15	56.1
LXL04_016646	`PF00117.35`	GATase	197	386	5.7e-11	43.2
LXL04_016646	`PF10551.16`	MULE	462	533	1e-14	55.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65355`	Arabidopsis thaliana	Gamma-glutamyl hydrolase 2	61.624%	Swiss-Prot	weak database homology
`Q9SYL6`	Arabidopsis thaliana	Gamma-glutamyl hydrolase 1	61.905%	Swiss-Prot	weak database homology
`Q9ZV85`	Arabidopsis thaliana	Probable gamma-glutamyl hydrolase 3	62.762%	Swiss-Prot	weak database homology

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