LXL04_016613 | RubberDandelionOmics

Gene overview

LXL04_016613

Reference: OH-1004 Chr: Chr03 Coordinates: 128902093-128906179 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1815 bp · LXL04_016613|LXL04_016613|OH1004|cDNA

ATGCAGTTACGTAGAGCCCGAGAAGAACCAGCAAGAATGACAGAGGTTGCAGTAGTTTCCGGTGATAGAGAGACTGGAGCAATGGCAGCGCTTCCAACAAGGAGAAGACGGCCATCGGAATACGATCGTTTGTTGCCGACGTCGGCGTCGGCGTCGGCGGATGGTTATACGAAGGTAGATAAGCCACATGAGAAACCAGGGGCTGAGGTGGAGAAGGGCCTGTCATGGACATTTCCTATATTTGCCCTAGGTATATTGAG...

CDS

Download CDS FASTA

1815 bp · LXL04_016613|LXL04_016613|OH1004|CDS

ATGCAGTTACGTAGAGCCCGAGAAGAACCAGCAAGAATGACAGAGGTTGCAGTAGTTTCCGGTGATAGAGAGACTGGAGCAATGGCAGCGCTTCCAACAAGGAGAAGACGGCCATCGGAATACGATCGTTTGTTGCCGACGTCGGCGTCGGCGTCGGCGGATGGTTATACGAAGGTAGATAAGCCACATGAGAAACCAGGGGCTGAGGTGGAGAAGGGCCTGTCATGGACATTTCCTATATTTGCCCTAGGTATATTGAG...

Protein

Download Protein FASTA

604 aa · LXL04_016613|LXL04_016613|OH1004|PROTEIN

MQLRRAREEPARMTEVAVVSGDRETGAMAALPTRRRRPSEYDRLLPTSASASADGYTKVDKPHEKPGAEVEKGLSWTFPIFALGILRYLSATTNIIHDCDEVFNYWEPLHFLLYKSGFQTWEYSSEFALRSYLYILFHYIMGWPASQIYNYLEEEKVRVFYAVRIFLGLLSVISEAALVVALSRKFGKRLGCYTLALLCLTSGCFFASTSFLPSSFSMYAISLSSALFLFGMHAMAVAVAATGVILGWPFSILAFLPVTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016613`
TK1151 ID	TkA02G118950
OH-1004 ID	LXL04_016613
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 95.530 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016613

Location Chr03:128902093-128906179 (-)

Description Similar to ALG9: Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16900`	Mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016613 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0006488 dolichol-linked oligosaccharide biosynthetic process Biological Process

GO:0036503 ERAD pathway Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

GO:0098553 lumenal side of endoplasmic reticulum membrane Cellular Component

GO:0000026 alpha-1,2-mannosyltransferase activity Molecular Function

GO:0004377 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0052918 dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G16900

cel:CELE_C14A4.3

dme:Dmel_CG11851

hsa:79796

mmu:102580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.870

Rank 1 · LXL04_016613 · OH-1004

Golgi apparatus0.090

Rank 2 · LXL04_016613 · OH-1004

Nucleus0.073

Rank 3 · LXL04_016613 · OH-1004

Cytoplasm0.044

Rank 4 · LXL04_016613 · OH-1004

Cell membrane0.035

Rank 5 · LXL04_016613 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03901.24Glyco_transf_2281-484 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016613	`PF03901.24`	Glyco_transf_22	81	484	3.7e-109	366.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ49`	Arabidopsis thaliana	Alpha-1,2-mannosyltransferase ALG9	66.551%	Swiss-Prot	strong database homology

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