Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1839 bp · LXL04_016606|LXL04_016606|OH1004|cDNA
ATGGAAGTGGTGTTCGGTACGACGCTGTGGGTCATATGGAATTATCACAATAATGTTGTGTTTGGGGATGGTACTTATCGGAGGAGTCTAATaagttggttcaaacgagaacaaattatgaaaacgagaacgcgagaacaaacgtggagccttgatcaattcaaaccaccggaccaccacttgcacccaccggaccaccacatgcacccaccaccggaccaccgccggaccaccgtcggaccaccgtcggtgcaccacct...
1839 bp · LXL04_016606|LXL04_016606|OH1004|CDS
ATGGAAGTGGTGTTCGGTACGACGCTGTGGGTCATATGGAATTATCACAATAATGTTGTGTTTGGGGATGGTACTTATCGGAGGAGTCTAATAAGTTGGTTCAAACGAGAACAAATTATGAAAACGAGAACGCGAGAACAAACGTGGAGCCTTGATCAATTCAAACCACCGGACCACCACTTGCACCCACCGGACCACCACATGCACCCACCACCGGACCACCGCCGGACCACCGTCGGACCACCGTCGGTGCACCACCT...
Protein
Download Protein FASTA612 aa · LXL04_016606|LXL04_016606|OH1004|PROTEIN
MEVVFGTTLWVIWNYHNNVVFGDGTYRRSLISWFKREQIMKTRTREQTWSLDQFKPPDHHLHPPDHHMHPPPDHRRTTVGPPSVHHLHPSAHWTTDAPPPDHRRTTAVPPPDHSFEMGKSASEIKITLIYDADAEADEEMLTLMKAENVQFPLPANESREQSPDTSGNQSTLNQPVMFWTNGGLLGLEPSKPLDFGLPTCPIEEETKTDNPQKTTSNEDTLLNTSKSEDSINSSRIFEFSNRLLVNGFRRQISLVGNETL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016606 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016606 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr03:128589955-128598607 (+) | ||||||
| Description | Protein of unknown function | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0030036 actin cytoskeleton organization Biological Process GO:0051127 positive regulation of actin nucleation Biological Process GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005856 cytoskeleton Cellular Component GO:0031209 SCAR complex Cellular Component GO:0003779 actin binding Molecular Function GO:0034237 protein kinase A regulatory subunit binding Molecular Function GO:0071933 Arp2/3 complex binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT1G29170 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9LP46 | Arabidopsis thaliana | Protein SCAR3 | 28.421% | Swiss-Prot | weak database homology |