LXL04_016469 | RubberDandelionOmics

Gene overview

LXL04_016469

Reference: OH-1004 Chr: Chr03 Coordinates: 124120809-124121928 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

951 bp · LXL04_016469|LXL04_016469|OH1004|cDNA

ATGGGTGTGCCTGTGCCGGTGACGGATCCAATGACTCAGTTGCGGTTACCGCCGGGATTCCGGTTTTATCCTACTGACGAGGAGCTGATGGTGCAGTATCTTTGTCGGAAAGTCGCCGGGTATGATTTCCCTCTTCAGATTATCGGAGATGTTGATCTGTATAAGTTTGATCCGTGGGAATTACCAAGTAAGGCGATGTTTGGGGAGAAGGAATGGTACTTTTTTAGTCCGAGGGATCGAAAGTACCCAAATGGGTCTCG...

CDS

Download CDS FASTA

951 bp · LXL04_016469|LXL04_016469|OH1004|CDS

ATGGGTGTGCCTGTGCCGGTGACGGATCCAATGACTCAGTTGCGGTTACCGCCGGGATTCCGGTTTTATCCTACTGACGAGGAGCTGATGGTGCAGTATCTTTGTCGGAAAGTCGCCGGGTATGATTTCCCTCTTCAGATTATCGGAGATGTTGATCTGTATAAGTTTGATCCGTGGGAATTACCAAGTAAGGCGATGTTTGGGGAGAAGGAATGGTACTTTTTTAGTCCGAGGGATCGAAAGTACCCAAATGGGTCTCG...

Protein

Download Protein FASTA

316 aa · LXL04_016469|LXL04_016469|OH1004|PROTEIN

MGVPVPVTDPMTQLRLPPGFRFYPTDEELMVQYLCRKVAGYDFPLQIIGDVDLYKFDPWELPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIISEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLSEPSKKSNSSRLDDWVLCRIYKKNSSAEKTISGGPSTDQSHNSSSSSSSQFDDVLDSLPAIDDKFMNFPSRTYHEEDQKLDIQKFESENHDWASIGAFGLQDTVTNTNQAHTTSIDMTF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016469`
TK1151 ID	TkA02G137420
OH-1004 ID	LXL04_016469
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016469

Location Chr03:124120809-124121928 (-)

Description Similar to JA2L: NAC domain-containing protein JA2L

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27410`	May participate in stress responses and transcriptional regulation of associated genes.	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter.2004 · DOI: 10.1105/tpc.104.022699 Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.2018 · DOI: 10.1111/nph.15127
`At3g15500`	Transcription factors that bind specifically to the 5'-CATGTG-3' motif.	No verified direct reference in this release
`At1g52890`	Transcription factors that bind specifically to the 5'-CATGTG-3' motif.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016469 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:1900055 regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G52890

ath:AT3G15500

ath:AT4G27410

sly:101248026

sly:543526

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · LXL04_016469 · OH-1004

Cytoplasm0.092

Rank 2 · LXL04_016469 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_016469 · OH-1004

Endoplasmic reticulum0.032

Rank 4 · LXL04_016469 · OH-1004

Plastid0.015

Rank 5 · LXL04_016469 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM17-141 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016469	`PF02365.21`	NAM	17	141	1.4e-48	165.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93VY3`	Arabidopsis thaliana	NAC domain-containing protein 72	55.518%	Swiss-Prot	strong database homology
`Q9LDY8`	Arabidopsis thaliana	NAC domain-containing protein 55	72.115%	Swiss-Prot	moderate database homology
`Q9C932`	Arabidopsis thaliana	NAC domain-containing protein 19	65.306%	Swiss-Prot	strong database homology

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