LXL04_016406 | RubberDandelionOmics

Gene overview

LXL04_016406

Reference: OH-1004 Chr: Chr03 Coordinates: 121840935-121842660 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1419 bp · LXL04_016406|LXL04_016406|OH1004|cDNA

ATTCGGCATTCGTCCATTCATAAACCTCTTCTTCCTCCTTGATCCGCTTCAAAGTTTGCCTGTAGGTGCGTTGATGGCTGCCTGAATACGAAACATAAAACCTCCACAAAAGCGATGAAAGAGAGGTCCTCTGGTTTGATCATCGGGATCTCAATAGGAGTAGTAATCGGAGCTCTTCTAGCCTTAATCGGTCTACTCTGCTTCAGATATCACCGGAAACGACCTCAAATCGGCAACAGCAGTTCCAGAAGAGCAGCAAC...

CDS

Download CDS FASTA

1338 bp · LXL04_016406|LXL04_016406|OH1004|CDS

CTGAATACGAAACATAAAACCTCCACAAAAGCGATGAAAGAGAGGTCCTCTGGTTTGATCATCGGGATCTCAATAGGAGTAGTAATCGGAGCTCTTCTAGCCTTAATCGGTCTACTCTGCTTCAGATATCACCGGAAACGACCTCAAATCGGCAACAGCAGTTCCAGAAGAGCAGCAACCATTCCCATTCGTACTAATGGCGCTGATACCTGCACGATATTATCAGACTCATCAATGGGCACCGAATCATCACGAACATC...

Protein

Download Protein FASTA

445 aa · LXL04_016406|LXL04_016406|OH1004|PROTEIN

MNTKHKTSTKAMKERSSGLIIGISIGVVIGALLALIGLLCFRYHRKRPQIGNSSSRRAATIPIRTNGADTCTILSDSSMGTESSRTSAQTGNPVWFSGVKKGHVVAASGILEYSYKDLQKATYNFTSLIGQGAFGPVYKAQMTAGEAVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGSLASHLYDLGENHESLSWDLRVQIALDVARGLEYLHDGAIPPVIHRDIKSSNILLDQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016406`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016406

Location Chr03:121840935-121842660 (-)

Description Similar to CRLK1: Calcium/calmodulin-regulated receptor-like kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54590`	Required for cold tolerance, via the activation of MAP kinases activity.	Phosphorylation of Arabidopsis thaliana MEKK1 via Ca(2+) signaling as a part of the cold stress response.2013 · DOI: 10.1007/s10265-013-0576-0
`At5g15730`	Calcium/calmodulin-regulated receptor-like kinase 2.	No verified direct reference in this release
`At3g07070`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g20650`	May be involved in plant defense signaling.	No verified direct reference in this release
`At3g24790`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016406 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009409 response to cold Biological Process

GO:0009631 cold acclimation Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0031349 positive regulation of defense response Biological Process

GO:0045087 innate immune response Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G20650

ath:AT3G07070

ath:AT3G24790

ath:AT5G15730

ath:AT5G54590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.803

Rank 1 · LXL04_016406 · OH-1004

Cytoplasm0.154

Rank 2 · LXL04_016406 · OH-1004

Nucleus0.124

Rank 3 · LXL04_016406 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_016406 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_016406 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase123-386 aa

PF07714.24PK_Tyr_Ser-Thr125-388 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016406	`PF00069.32`	Pkinase	123	386	1.9e-49	169.2
LXL04_016406	`PF07714.24`	PK_Tyr_Ser-Thr	125	388	1.8e-51	175.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FIU5`	Arabidopsis thaliana	Calcium/calmodulin-regulated receptor-like kinase 1	71.461%	Swiss-Prot	strong database homology
`Q9LFV3`	Arabidopsis thaliana	Calcium/calmodulin-regulated receptor-like kinase 2	47.631%	Swiss-Prot	moderate database homology
`Q9SFT7`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL26	38.904%	Swiss-Prot	moderate database homology
`Q9LDZ5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL21	38.109%	Swiss-Prot	moderate database homology
`Q9LRY1`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL25	43.299%	Swiss-Prot	moderate database homology

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