Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1359 bp · LXL04_016345|LXL04_016345|OH1004|cDNA
ATGCTGTTTACTTTCTTTCTTGCTAAGATCCAGATTATCCAACATGGAATCGCTCGGGTTGCTGTCGGTGATCAACCGGAAAACATTTACGAGCAGATTTCAGGTATTTCGTTTATTACAAATATGATAATGGAGCACATCAAACCAGAAGAAAGCATAATTTTGAATGTTCTTGCTGCAAATGTTGATTTCGCCACCTGTGACTCCATTTGCATGTCCCGGCGAGTTGACACCACCGGTCAAAGAACTTTGGCCGTCGT...
1359 bp · LXL04_016345|LXL04_016345|OH1004|CDS
ATGCTGTTTACTTTCTTTCTTGCTAAGATCCAGATTATCCAACATGGAATCGCTCGGGTTGCTGTCGGTGATCAACCGGAAAACATTTACGAGCAGATTTCAGGTATTTCGTTTATTACAAATATGATAATGGAGCACATCAAACCAGAAGAAAGCATAATTTTGAATGTTCTTGCTGCAAATGTTGATTTCGCCACCTGTGACTCCATTTGCATGTCCCGGCGAGTTGACACCACCGGTCAAAGAACTTTGGCCGTCGT...
Protein
Download Protein FASTA452 aa · LXL04_016345|LXL04_016345|OH1004|PROTEIN
MLFTFFLAKIQIIQHGIARVAVGDQPENIYEQISGISFITNMIMEHIKPEESIILNVLAANVDFATCDSICMSRRVDTTGQRTLAVVTKSDQSPDGLLEKVTLNDVNIGLGYICVRNRIKDETYQEARLQESKLFETHPLLSKIDKSMIELNKLPRILTSIPDAMAEFMQIVGSLKETFQKILIRGALEYDDKEMHCNARFGEINGEVLEEANGIRLPFFLSNSAFLYLLKKKVNNVSELPINFLNKVFGCLENVCGRVL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016345 |
|---|---|
| TK1151 ID | TkA02G153110 |
| OH-1004 ID | LXL04_016345 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 42.478Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016345 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:119535804-119537816 (+) | |||||||||
| Description | Similar to DRP4C: Dynamin-related protein 4C | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009615 response to virus Biological Process GO:0031623 receptor internalization Biological Process GO:0043330 response to exogenous dsRNA Biological Process GO:0051607 defense response to virus Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005874 microtubule Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0003924 GTPase activity Molecular Function GO:0005525 GTP binding Molecular Function GO:0008017 microtubule binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G60500 ath:AT1G60530 dre:337663 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00350.30Dynamin_N16-89 aaPF01031.26Dynamin_M98-159 aaPF01031.26Dynamin_M207-318 aaPF02212.24GED360-448 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016345 | PF00350.30 | Dynamin_N | 16 | 89 | 4.7e-08 | 34.0 |
| LXL04_016345 | PF01031.26 | Dynamin_M | 98 | 159 | 1.9e-32 | 113.3 |
| LXL04_016345 | PF01031.26 | Dynamin_M | 207 | 318 | 1.9e-32 | 113.3 |
| LXL04_016345 | PF02212.24 | GED | 360 | 448 | 5.8e-11 | 43.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.