LXL04_016281 | RubberDandelionOmics

Gene overview

LXL04_016281

Reference: OH-1004 Chr: Chr03 Coordinates: 117240454-117255974 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5910 bp · LXL04_016281|LXL04_016281|OH1004|cDNA

ATGCAAGAGGAGCCCAACGAGATCATCAACAGTGGAGTGGTCACCTTGGACCAGGAATGCAGCTGTGAATGGGCTCGACAACCATCACTAGACTTCCGAGAGAGGAGGGTGACGGTGGtacaaggcaacgtgtgcttAAGCCAAGGGAAACGTGAACTAGAGAGCATGAGAGCCGAGAGGGAAAACCGATTTCGGTGTGGGGCTGTCGCCGGAGGATCCTTCAAGCATATACCTTTAATGGCGTCTTCTTCCACTGCATC...

CDS

Download CDS FASTA

5910 bp · LXL04_016281|LXL04_016281|OH1004|CDS

ATGCAAGAGGAGCCCAACGAGATCATCAACAGTGGAGTGGTCACCTTGGACCAGGAATGCAGCTGTGAATGGGCTCGACAACCATCACTAGACTTCCGAGAGAGGAGGGTGACGGTGGTACAAGGCAACGTGTGCTTAAGCCAAGGGAAACGTGAACTAGAGAGCATGAGAGCCGAGAGGGAAAACCGATTTCGGTGTGGGGCTGTCGCCGGAGGATCCTTCAAGCATATACCTTTAATGGCGTCTTCTTCCACTGCATC...

Protein

Download Protein FASTA

1969 aa · LXL04_016281|LXL04_016281|OH1004|PROTEIN

MQEEPNEIINSGVVTLDQECSCEWARQPSLDFRERRVTVVQGNVCLSQGKRELESMRAERENRFRCGAVAGGSFKHIPLMASSSTASIHHKSFKYDAFLSFRGEDTRKNFVDHLYHALQEKSIHTYKDDERINKGKRISDELIGSIEDSKYFIIVFSKNYACSSWCLDELVKIMECHKTTEHIAYPVFYDVEPTEVRKQSGAVGEAFAKYENDEAAGKWRKAMKEAADLAGWELKNTTHGHEAKFIQTIVEEVSIELRSI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016281`
TK1151 ID	TkA02G162160
OH-1004 ID	LXL04_016281
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.400
Protein coverage (%)	TK1151 97.053 / OH-1004 51.092 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016281

Location Chr03:117240454-117255974 (-)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44510`	TIR-NB-LRR receptor-like protein that contributes to disease resistance induced by the Pseudomonas syringae type III effector AvrB.	Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.2008 · DOI: 10.1073/pnas.0802157105

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016281 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.445

Rank 1 · LXL04_016281 · OH-1004

Cell membrane0.303

Rank 2 · LXL04_016281 · OH-1004

Nucleus0.241

Rank 3 · LXL04_016281 · OH-1004

Endoplasmic reticulum0.090

Rank 4 · LXL04_016281 · OH-1004

Extracellular0.059

Rank 5 · LXL04_016281 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR94-261 aa

PF13676.12TIR_298-193 aa

PF00931.29NB-ARC286-450 aa

PF05729.19NACHT298-396 aa

PF13401.13AAA_22302-397 aa

PF23282.2WHD_ROQ1488-551 aa

PF23952.2LRR_EndoS679-747 aa

PF01582.26TIR954-1115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016281	`PF01582.26`	TIR	94	261	2.8e-87	291.8
LXL04_016281	`PF13676.12`	TIR_2	98	193	1.5e-26	94.0
LXL04_016281	`PF00931.29`	NB-ARC	286	450	3.7e-45	154.3
LXL04_016281	`PF05729.19`	NACHT	298	396	3.3e-08	34.3
LXL04_016281	`PF13401.13`	AAA_22	302	397	1.5e-10	42.2
LXL04_016281	`PF23282.2`	WHD_ROQ1	488	551	2.2e-27	95.7
LXL04_016281	`PF23952.2`	LRR_EndoS	679	747	4.6e-08	34.0
LXL04_016281	`PF01582.26`	TIR	954	1115	2.8e-87	291.8
LXL04_016281	`PF13676.12`	TIR_2	959	1043	1.5e-26	94.0
LXL04_016281	`PF00931.29`	NB-ARC	1143	1301	3.7e-45	154.3
LXL04_016281	`PF23282.2`	WHD_ROQ1	1370	1442	2.2e-27	95.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI14`	Arabidopsis thaliana	Disease resistance protein TAO1	31.352%	Swiss-Prot	weak database homology

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