LXL04_016254 | RubberDandelionOmics

Gene overview

LXL04_016254

Reference: OH-1004 Chr: Chr03 Coordinates: 116595353-116597266 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

714 bp · LXL04_016254|LXL04_016254|OH1004|cDNA

ATGAAGATTATGCAAATAATCTTCATGGTAGCCATCACCATCGCCATCAGCACGCTCACCATCACCTCCACGGCCACCACCAACACACCATCTCCGGTGACCATAAGAGCCTTTCCATCAAGGCCGGTAAGTCGTTTCCTTGCTGAGAAAGAACGTAACCCTAGAGCTGCAGATCACTGCAAGGATGACGACGAGATTTGTTATATCTTGGAGGGAAAAAACTCAACTTGCTGCAATAACAAGTGCATGGATTTGAGCGA...

CDS

Download CDS FASTA

714 bp · LXL04_016254|LXL04_016254|OH1004|CDS

ATGAAGATTATGCAAATAATCTTCATGGTAGCCATCACCATCGCCATCAGCACGCTCACCATCACCTCCACGGCCACCACCAACACACCATCTCCGGTGACCATAAGAGCCTTTCCATCAAGGCCGGTAAGTCGTTTCCTTGCTGAGAAAGAACGTAACCCTAGAGCTGCAGATCACTGCAAGGATGACGACGAGATTTGTTATATCTTGGAGGGAAAAAACTCAACTTGCTGCAATAACAAGTGCATGGATTTGAGCGA...

Protein

Download Protein FASTA

237 aa · LXL04_016254|LXL04_016254|OH1004|PROTEIN

MKIMQIIFMVAITIAISTLTITSTATTNTPSPVTIRAFPSRPVSRFLAEKERNPRAADHCKDDDEICYILEGKNSTCCNNKCMDLSEDKHNCGACKKKCKFTSSCCNGECVNLAYDKRHCGSCGTKCMPGGYCIYDGNNDLLLILEECRARVWLRTYETSEDAAAVYDQAAFRGGFVKFSAPHRNKHGNVDEGESTTDVGDGVWYATIIFLGRPAIKAMKLKKMIVITAMTMLRMRK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016254`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016254

Location Chr03:116595353-116597266 (-)

Description Similar to At1g50720: Stigma-specific STIG1-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50720`	Stigma-specific STIG1-like protein 3.	No verified direct reference in this release
`At5g55110`	Stigma-specific STIG1-like protein 2.	No verified direct reference in this release
`At4g26880`	Stigma-specific STIG1-like protein 1.	No verified direct reference in this release
`At1g50650`	Endosperm-specific cysteine-rich protein that acts downstream of BHLH95/ZOU to modify the interface between embryo and endosperm and mediate the separation of these two tissues during seed development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016254 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0048316 seed development Biological Process

GO:0160062 cutin-based cuticle development Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G50650

ath:AT1G50720

ath:AT4G26880

ath:AT5G55110

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.388

Rank 1 · LXL04_016254 · OH-1004

Cell membrane0.226

Rank 2 · LXL04_016254 · OH-1004

Endoplasmic reticulum0.189

Rank 3 · LXL04_016254 · OH-1004

Cytoplasm0.121

Rank 4 · LXL04_016254 · OH-1004

Lysosome / Vacuole0.076

Rank 5 · LXL04_016254 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04885.20Stig158-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016254	`PF04885.20`	Stig1	58	135	1.2e-23	84.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6T5`	Arabidopsis thaliana	Stigma-specific STIG1-like protein 3	46.099%	Swiss-Prot	moderate database homology
`Q9FLQ0`	Arabidopsis thaliana	Stigma-specific STIG1-like protein 2	55.000%	Swiss-Prot	weak database homology
`Q9SZ28`	Arabidopsis thaliana	Stigma-specific STIG1-like protein 1	54.783%	Swiss-Prot	weak database homology
`Q9C6P6`	Arabidopsis thaliana	Stigma-specific STIG1-like protein 4	42.373%	Swiss-Prot	weak database homology

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