Gene Card
Gene overview
cDNA / CDS / Protein Sequences
213 bp · LXL04_016208|LXL04_016208|OH1004|cDNA
ATGGGTTTTATGTATACAACTCTGAGCTTTCTAGCTATCGGAATCATTGCTTGCCTTTGCACCCGAATTTGCTGCAACAAAGGCCCTTCCGCTAACCTGTTCCACCTTACATTGGTGATTACCGCAACGATATGCTGTTGGATGATGTGGGCGATTGTTTATCTGGCACAAATGAACCCACTCATTGTCCCAATTTTGAGTGAAGGAGAATGA
213 bp · LXL04_016208|LXL04_016208|OH1004|CDS
ATGGGTTTTATGTATACAACTCTGAGCTTTCTAGCTATCGGAATCATTGCTTGCCTTTGCACCCGAATTTGCTGCAACAAAGGCCCTTCCGCTAACCTGTTCCACCTTACATTGGTGATTACCGCAACGATATGCTGTTGGATGATGTGGGCGATTGTTTATCTGGCACAAATGAACCCACTCATTGTCCCAATTTTGAGTGAAGGAGAATGA
Protein
Download Protein FASTA70 aa · LXL04_016208|LXL04_016208|OH1004|PROTEIN
MGFMYTTLSFLAIGIIACLCTRICCNKGPSANLFHLTLVITATICCWMMWAIVYLAQMNPLIVPILSEGE
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016208 |
|---|---|
| TK1151 ID | TkA07G445310 |
| OH-1004 ID | LXL04_016208 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 91.400 |
| Protein coverage (%) | TK1151 65.421 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016208 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:115191456-115192036 (+) | |||||||||
| Description | Similar to VHA-e1: V-type proton ATPase subunit e1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0010172 embryonic body morphogenesis Biological Process GO:0060142 regulation of syncytium formation by plasma membrane fusion Biological Process GO:1902600 proton transmembrane transport Biological Process GO:0000139 Golgi membrane Cellular Component GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain Cellular Component GO:0005773 vacuole Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0016324 apical plasma membrane Cellular Component GO:0043296 apical junction complex Cellular Component GO:0046961 proton-transporting ATPase activity, rotational mechanism Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G26710 ath:AT5G55290 cel:CELE_F49C12.13 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05493.19ATP_synt_H3-67 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016208 | PF05493.19 | ATP_synt_H | 3 | 67 | 8e-21 | 75.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.