Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2052 bp · LXL04_016152|LXL04_016152|OH1004|cDNA
ATGGATCAAAACGAGGCCCACGGCGGTGGAGATGCGAACGAGCAGTTCCATCGGAACGAAGCAATCTCCGCCGTCGTTGACGAGGGTTTCTTGGGGGAAGACGATGATGATTATGAGGATCTTTATAACGACGTTAATGTTGGCGAGGGTTTTCTTCAAACTCTTCAGAAGAATAACGATGTAGGGTTTAGGAACGAGGAAGAAGTTAAGAAGGAGAAATCGCAACCGGTCCCTCAGCCGGTTCATCACCCACAACCCTT...
2052 bp · LXL04_016152|LXL04_016152|OH1004|CDS
ATGGATCAAAACGAGGCCCACGGCGGTGGAGATGCGAACGAGCAGTTCCATCGGAACGAAGCAATCTCCGCCGTCGTTGACGAGGGTTTCTTGGGGGAAGACGATGATGATTATGAGGATCTTTATAACGACGTTAATGTTGGCGAGGGTTTTCTTCAAACTCTTCAGAAGAATAACGATGTAGGGTTTAGGAACGAGGAAGAAGTTAAGAAGGAGAAATCGCAACCGGTCCCTCAGCCGGTTCATCACCCACAACCCTT...
Protein
Download Protein FASTA683 aa · LXL04_016152|LXL04_016152|OH1004|PROTEIN
MDQNEAHGGGDANEQFHRNEAISAVVDEGFLGEDDDDYEDLYNDVNVGEGFLQTLQKNNDVGFRNEEEVKKEKSQPVPQPVHHPQPLDDVAGGGGRGEMKFENNDGVSTRADANSNIGLGVKEVSGRGSGGGLRVELGQSSAKVGEVESRTMDANNNNMPNLVAGQHPPHVGTVGSLSNPADDGIPRQSSGNVNGSGGNAFGNGGVGGGMNSNAVGGGGGGGGGGTILFVGDLHWWTTDAELETELCKYGHVKEVKFFDE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016152 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016152 |
|---|---|
| Location | Chr03:112320783-112322979 (+) |
| Description | Similar to Glycine-rich RNA-binding protein GRP1A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0006509 membrane protein ectodomain proteolysis Biological Process GO:0007064 mitotic sister chromatid cohesion Biological Process GO:0010468 regulation of gene expression Biological Process GO:0034087 establishment of mitotic sister chromatid cohesion Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0048025 negative regulation of mRNA splicing, via spliceosome Biological Process GO:0048026 positive regulation of mRNA splicing, via spliceosome Biological Process GO:0048589 developmental growth Biological Process |
| KEGG gene cross-reference | dre:794108 hsa:27288 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_1228-297 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016152 | PF00076.29 | RRM_1 | 228 | 297 | 1.4e-14 | 54.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.