LXL04_016137 | RubberDandelionOmics

Gene overview

LXL04_016137

Reference: OH-1004 Chr: Chr03 Coordinates: 111873389-111875973 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1032 bp · LXL04_016137|LXL04_016137|OH1004|cDNA

ATGAAGACGCTGAATACGAATCCCTTAAAGATGAAGCCCTTGAGCTCCTCCTTGATTTTCTTCAACAGCAATCCTGTACTGAAGTCTTCGATTCTGGATCTAGAGGCTGAACAGCGTGTTATAACCCTGAACTTCAATTATAAACCACATCTCTTAGTTGGGGCAGGCTACCTTGCTTTTGGATTCTTCATTGGTGAACGAAAACCTGGTCACAAGTTTTTTTCAACTAAAGCAGCTGAAGTTACTGCAGTTGTAGATGG...

CDS

Download CDS FASTA

1032 bp · LXL04_016137|LXL04_016137|OH1004|CDS

ATGAAGACGCTGAATACGAATCCCTTAAAGATGAAGCCCTTGAGCTCCTCCTTGATTTTCTTCAACAGCAATCCTGTACTGAAGTCTTCGATTCTGGATCTAGAGGCTGAACAGCGTGTTATAACCCTGAACTTCAATTATAAACCACATCTCTTAGTTGGGGCAGGCTACCTTGCTTTTGGATTCTTCATTGGTGAACGAAAACCTGGTCACAAGTTTTTTTCAACTAAAGCAGCTGAAGTTACTGCAGTTGTAGATGG...

Protein

Download Protein FASTA

343 aa · LXL04_016137|LXL04_016137|OH1004|PROTEIN

MKTLNTNPLKMKPLSSSLIFFNSNPVLKSSILDLEAEQRVITLNFNYKPHLLVGAGYLAFGFFIGERKPGHKFFSTKAAEVTAVVDGTGSKKGRSKPPLEIEKLAEIIEDFKMVLVIRNDLKMGKGKIAAQCSHATLGIYKKILHRALKDLNRWEMCEQVKVVVKIESEDDMLVLQNLLTLNVATCYLKMGDCRKSIETCNKVLDANPVHVKALYRRGMAYMEVGDYEEARTDFNKMMTIDKSSEVNAKSALLKLKQIEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016137`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016137

Location Chr03:111873389-111875973 (-)

Description Similar to PAS1: Peptidyl-prolyl cis-trans isomerase PASTICCINO1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54010`	PPIases accelerate the folding of proteins.	Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis.2010 · DOI: 10.1105/tpc.109.071209 The PASTICCINO genes of Arabidopsis thaliana are involved in the control of cell division and differentiation.1998 · DOI: 10.1242/dev.125.5.909 Mutation in the Arabidopsis PASTICCINO1 gene, which encodes a new FK506-binding protein-like protein, has a dramatic effect on plant development.1998 · DOI: 10.1128/mcb.18.5.3034

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016137 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009880 embryonic pattern specification Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0030010 establishment of cell polarity Biological Process

GO:0030154 cell differentiation Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0048364 root development Biological Process

KEGG gene cross-reference

ath:AT3G54010

bta:516595

dme:Dmel_CG1307

hsa:51651

mmu:217057

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.861

Rank 1 · LXL04_016137 · OH-1004

Mitochondrion0.126

Rank 2 · LXL04_016137 · OH-1004

Nucleus0.039

Rank 3 · LXL04_016137 · OH-1004

Cytoplasm0.027

Rank 4 · LXL04_016137 · OH-1004

Cell membrane0.014

Rank 5 · LXL04_016137 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01981.22PTH2111-194 aa

PF13432.13TPR_16187-236 aa

PF00515.35TPR_1211-241 aa

PF13181.13TPR_8212-242 aa

PF07719.24TPR_2212-242 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016137	`PF01981.22`	PTH2	111	194	2.2e-22	80.1
LXL04_016137	`PF13432.13`	TPR_16	187	236	6.4e-06	27.2
LXL04_016137	`PF00515.35`	TPR_1	211	241	5.9e-11	42.4
LXL04_016137	`PF13181.13`	TPR_8	212	242	5.1e-09	36.3
LXL04_016137	`PF07719.24`	TPR_2	212	242	1.4e-08	34.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q7DMA9`	Arabidopsis thaliana	Peptidyl-prolyl cis-trans isomerase PASTICCINO1	70.000%	Swiss-Prot	weak database homology

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