LXL04_016121 | RubberDandelionOmics

Gene overview

LXL04_016121

Reference: OH-1004 Chr: Chr03 Coordinates: 111290806-111291246 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

441 bp · LXL04_016121|LXL04_016121|OH1004|cDNA

ATGGATACCCAGTATCATTCACACATGGCACACAACCAAGTCAGCGGCAAGACGATTCTATTGGCAACCCTCAGCGCAATCGCAGTTGGAGGACCGCTTCTTGCGATGATGGGTTTCAGTTTCTTGTCGACGATGACTCTCTTCATATTCACTTCTCCACTTCTTATCATCTTCAGTCCTCTTCTCTTGGGTGCTGGTTTTGTGTTAGTACTAGCCTTGGTGGGGTTTGGTGCGGCGGCGTTGATGGCCATCGCGGGGTT...

CDS

Download CDS FASTA

441 bp · LXL04_016121|LXL04_016121|OH1004|CDS

ATGGATACCCAGTATCATTCACACATGGCACACAACCAAGTCAGCGGCAAGACGATTCTATTGGCAACCCTCAGCGCAATCGCAGTTGGAGGACCGCTTCTTGCGATGATGGGTTTCAGTTTCTTGTCGACGATGACTCTCTTCATATTCACTTCTCCACTTCTTATCATCTTCAGTCCTCTTCTCTTGGGTGCTGGTTTTGTGTTAGTACTAGCCTTGGTGGGGTTTGGTGCGGCGGCGTTGATGGCCATCGCGGGGTT...

Protein

Download Protein FASTA

146 aa · LXL04_016121|LXL04_016121|OH1004|PROTEIN

MDTQYHSHMAHNQVSGKTILLATLSAIAVGGPLLAMMGFSFLSTMTLFIFTSPLLIIFSPLLLGAGFVLVLALVGFGAAALMAIAGLSALGWVLRSVKEHEFLGLGTATEKLMESAENVKDTGKEWAGNLKQTVQNSPENMTANSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016121`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016121

Location Chr03:111290806-111291246 (-)

Description Similar to At3g01570: Oleosin 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01570`	May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016121 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009791 post-embryonic development Biological Process

GO:0010344 seed oilbody biogenesis Biological Process

GO:0019915 lipid storage Biological Process

GO:0048608 reproductive structure development Biological Process

GO:0050826 response to freezing Biological Process

GO:0005576 extracellular region Cellular Component

GO:0012511 monolayer-surrounded lipid storage body Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G01570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.264

Rank 1 · LXL04_016121 · OH-1004

Cytoplasm0.239

Rank 2 · LXL04_016121 · OH-1004

Nucleus0.160

Rank 3 · LXL04_016121 · OH-1004

Mitochondrion0.148

Rank 4 · LXL04_016121 · OH-1004

Extracellular0.140

Rank 5 · LXL04_016121 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01277.23Oleosin20-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016121	`PF01277.23`	Oleosin	20	125	2.1e-17	63.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SS98`	Arabidopsis thaliana	Oleosin 5	30.469%	Swiss-Prot	moderate database homology

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