LXL04_016001 | RubberDandelionOmics

基因概览

LXL04_016001

当前版本: OH-1004 染色体: Chr03 坐标: 102907988-102913653 链方向: - 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

2667 bp · LXL04_016001|LXL04_016001|OH1004|cDNA

ATGGAAAGTTCAGATCCGGAATCAAGCACCAAAAATAATAAATGGATGGCATTCGATAATCAAAACAAACCGCCAATCGCTAGAATCACTCCACCTGAAGATGAATATGACACGGATCACATAGCCGAACGGACAGCGGCTTGGCCGGGAGCAACAGCAGTCGCAGGGTTAATCGGGGATGAGGAGAGAAATAAGCGAAGCTCGTCGTCGTCGTGGAGGACGTCAGATGATTTGAATCATCCGCGAGTCTCGCAAGACTT...

CDS

下载 CDS FASTA

2667 bp · LXL04_016001|LXL04_016001|OH1004|CDS

ATGGAAAGTTCAGATCCGGAATCAAGCACCAAAAATAATAAATGGATGGCATTCGATAATCAAAACAAACCGCCAATCGCTAGAATCACTCCACCTGAAGATGAATATGACACGGATCACATAGCCGAACGGACAGCGGCTTGGCCGGGAGCAACAGCAGTCGCAGGGTTAATCGGGGATGAGGAGAGAAATAAGCGAAGCTCGTCGTCGTCGTGGAGGACGTCAGATGATTTGAATCATCCGCGAGTCTCGCAAGACTT...

蛋白

下载蛋白 FASTA

888 aa · LXL04_016001|LXL04_016001|OH1004|PROTEIN

MESSDPESSTKNNKWMAFDNQNKPPIARITPPEDEYDTDHIAERTAAWPGATAVAGLIGDEERNKRSSSSSWRTSDDLNHPRVSQDLKDALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGRNCRFLQGKETDQKEVDKIRNAVKTGTSYCGRLYNYKKDGTPFWNLLTVTPIKDENGKTIKFIGMQVEVSKYTEGVNDKELRPNGLPTSLIRYDARQKETALGSIVEVVQTVERPRTNNQSSKTETVERI...

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`LXL04_016001`
版本	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel 变异与样本携带情况CRA009020 · OH-1004

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID LXL04_016001

位置 Chr03:102907988-102913653 (-)

描述 Similar to PHOT2: Phototropin-2

拟南芥 / 水稻参考基因与文献

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拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At5g58140`	在光诱导运动的信号传导通路中，作为蓝光光受体的蛋白激酶。	Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response.2001 · DOI: 10.1126/science.291.5511.2138 Arabidopsis nph1 and npl1: blue light receptors that mediate both phototropism and chloroplast relocation.2001 · DOI: 10.1073/pnas.101137598 Phot1 and phot2 mediate blue light-induced transient increases in cytosolic Ca2+ differently in Arabidopsis leaves.2003 · DOI: 10.1073/pnas.1336802100 A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant.2004 · DOI: 10.1093/jxb/erh044 Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis.2004 · DOI: 10.1073/pnas.0305984101 RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019901 Biochemical characterization of plasma membrane H+-ATPase activation in guard cell protoplasts of Arabidopsis thaliana in response to blue light.2005 · DOI: 10.1093/pcp/pci104 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223
`At3g45780`	蛋白激酶，在光诱导运动的信号转导途径中作为蓝光（BL）光受体。	RPT2. A signal transducer of the phototropic response in Arabidopsis.2000 · DOI: 10.1105/tpc.12.2.225 Unexpected roles for cryptochrome 2 and phototropin revealed by high-resolution analysis of blue light-mediated hypocotyl growth inhibition.2001 · DOI: 10.1046/j.1365-313x.2001.01038.x Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization.2003 · DOI: 10.1023/a:1022393406204 Phot1 and phot2 mediate blue light-induced transient increases in cytosolic Ca2+ differently in Arabidopsis leaves.2003 · DOI: 10.1073/pnas.1336802100 A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant.2004 · DOI: 10.1093/jxb/erh044 Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis.2004 · DOI: 10.1073/pnas.0305984101 RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019901 Biochemical characterization of plasma membrane H+-ATPase activation in guard cell protoplasts of Arabidopsis thaliana in response to blue light.2005 · DOI: 10.1093/pcp/pci104 PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.2006 · DOI: 10.1073/pnas.0603799103 In vivo phosphorylation site mapping and functional characterization of Arabidopsis phototropin 1.2008 · DOI: 10.1093/mp/ssm017 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223

水稻

参考基因 ID	可能功能	对应论文 / DOI
`Os04g0304200`	蛋白激酶，在光向性反应的信号转导通路中作为蓝光光受体。	暂无已核实直接文献
`Os12g0101800`	蛋白激酶，在光向性反应的信号转导通路中作为蓝光光受体。	暂无已核实直接文献
`Os11g0102200`	蛋白激酶，在光向性反应的信号转导通路中作为蓝光光受体。	暂无已核实直接文献

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_016001 · GCA_047496595.1_OSU_TarKok_2.0。

GO 注释（OH1004 来源）

GO:0007623 circadian rhythm 生物过程

GO:0009637 response to blue light 生物过程

GO:0009638 phototropism 生物过程

GO:0009639 response to red or far red light 生物过程

GO:0009785 blue light signaling pathway 生物过程

GO:0009902 chloroplast relocation 生物过程

GO:0009903 chloroplast avoidance movement 生物过程

GO:0009904 chloroplast accumulation movement 生物过程

GO:0010118 stomatal movement 生物过程

GO:0010119 regulation of stomatal movement 生物过程

GO:0010155 regulation of proton transport 生物过程

GO:0046777 protein autophosphorylation 生物过程

KEGG 基因交叉引用

ath:AT3G45780

ath:AT5G58140

dosa:Os04g0304200

dosa:Os11g0102200

dosa:Os12g0101800

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

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基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

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数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞质0.511

排名 1 · LXL04_016001 · OH-1004

细胞膜0.405

排名 2 · LXL04_016001 · OH-1004

细胞核0.280

排名 3 · LXL04_016001 · OH-1004

高尔基体0.046

排名 4 · LXL04_016001 · OH-1004

内质网0.040

排名 5 · LXL04_016001 · OH-1004

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF13426.14PAS_9104-200 aa

PF00989.32PAS110-195 aa

PF08447.19PAS_3110-194 aa

PF13426.14PAS_9377-469 aa

PF00989.32PAS380-469 aa

PF08447.19PAS_3381-466 aa

PF00069.32Pkinase557-841 aa

PF07714.24PK_Tyr_Ser-Thr559-803 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
LXL04_016001	`PF13426.14`	PAS_9	104	200	7.3e-44	149.0
LXL04_016001	`PF00989.32`	PAS	110	195	1.6e-18	67.5
LXL04_016001	`PF08447.19`	PAS_3	110	194	3.8e-17	63.1
LXL04_016001	`PF13426.14`	PAS_9	377	469	7.3e-44	149.0
LXL04_016001	`PF00989.32`	PAS	380	469	1.6e-18	67.5
LXL04_016001	`PF08447.19`	PAS_3	381	466	3.8e-17	63.1
LXL04_016001	`PF00069.32`	Pkinase	557	841	1.1e-59	202.7
LXL04_016001	`PF07714.24`	PK_Tyr_Ser-Thr	559	803	2.4e-24	86.8

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

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蛋白	物种	描述	一致性	数据库	置信等级
`P93025`	拟南芥	Phototropin-2	70.412%	Swiss-Prot	强数据库同源证据
`O48963`	拟南芥	Phototropin-1	62.303%	Swiss-Prot	强数据库同源证据
`Q9ST27`	水稻	Phototropin-2	68.277%	Swiss-Prot	强数据库同源证据
`Q2QYY8`	水稻	Phototropin-1A	59.771%	Swiss-Prot	强数据库同源证据
`Q2RBR1`	水稻	Phototropin-1B	59.657%	Swiss-Prot	强数据库同源证据

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