LXL04_015941 | RubberDandelionOmics

Gene overview

LXL04_015941

Reference: OH-1004 Chr: Chr03 Coordinates: 99444372-99450128 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1842 bp · LXL04_015941|LXL04_015941|OH1004|cDNA

ATGCTGCGGAGGTCTATATTGGAAATATCTTCTCGTCGATCAGTAGGGCCACGAATAACAACTCAGATACCTTTGTATCTTTCCTCTAGGAAGGAATATTCGGCTGCATCTCAGTCAAGTTCACCCAAGGGATCAGGTTCACCAAACTCCGGGGGCAATTTGTCCAAAGTTTTTATAGCAAGTATAGCCTTAGGTGCTGGTGGTATAGCTGCTTACCAGACTGGCTACTTAGATAAAGTATTAAAGAAGGAACAAACCAT...

CDS

Download CDS FASTA

1842 bp · LXL04_015941|LXL04_015941|OH1004|CDS

ATGCTGCGGAGGTCTATATTGGAAATATCTTCTCGTCGATCAGTAGGGCCACGAATAACAACTCAGATACCTTTGTATCTTTCCTCTAGGAAGGAATATTCGGCTGCATCTCAGTCAAGTTCACCCAAGGGATCAGGTTCACCAAACTCCGGGGGCAATTTGTCCAAAGTTTTTATAGCAAGTATAGCCTTAGGTGCTGGTGGTATAGCTGCTTACCAGACTGGCTACTTAGATAAAGTATTAAAGAAGGAACAAACCAT...

Protein

Download Protein FASTA

613 aa · LXL04_015941|LXL04_015941|OH1004|PROTEIN

MLRRSILEISSRRSVGPRITTQIPLYLSSRKEYSAASQSSSPKGSGSPNSGGNLSKVFIASIALGAGGIAAYQTGYLDKVLKKEQTIDLNVHKEPQHSKTFTGDLQSGESVEQVAVQNVKDSEILSPPVDHGEKAVETDPYYGRREVENENQQEIKQLRVSESIDEKLPISTSDSHDSIAKFQEEVGTKSEDVKDTTQDHEEVQITSVPNEVTPVLKENDIKSEEFQQELTTNMPQGIESNGNKEADSLLDEYLLKDKSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015941`
TK1151 ID	TkA01G045650
OH-1004 ID	LXL04_015941
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015941

Location Chr03:99444372-99450128 (+)

Description Similar to mic60: MICOS complex subunit mic60 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39690`	Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane (By similarity).	AtMic60 Is Involved in Plant Mitochondria Lipid Trafficking and Is Part of a Large Complex.2016 · DOI: 10.1016/j.cub.2016.01.011

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015941 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006869 lipid transport Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0032368 regulation of lipid transport Biological Process

GO:0042407 cristae formation Biological Process

GO:0097035 regulation of membrane lipid distribution Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0061617 MICOS complex Cellular Component

GO:0098800 inner mitochondrial membrane protein complex Cellular Component

GO:1901612 cardiolipin binding Molecular Function

KEGG gene cross-reference

ath:AT4G39690

cal:CAALFM_CR03530WA

ctp:CTRG_00745

ncr:NCU00894

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.649

Rank 1 · LXL04_015941 · OH-1004

Cytoplasm0.118

Rank 2 · LXL04_015941 · OH-1004

Peroxisome0.101

Rank 3 · LXL04_015941 · OH-1004

Plastid0.089

Rank 4 · LXL04_015941 · OH-1004

Endoplasmic reticulum0.067

Rank 5 · LXL04_015941 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09731.15Mitofilin265-608 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015941	`PF09731.15`	Mitofilin	265	608	2.4e-67	229.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ASV5`	Arabidopsis thaliana	MICOS complex subunit MIC60, mitochondrial	46.316%	Swiss-Prot	moderate database homology

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