LXL04_015928 | RubberDandelionOmics

Gene overview

LXL04_015928

Reference: OH-1004 Chr: Chr03 Coordinates: 98696649-98697462 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

594 bp · LXL04_015928|LXL04_015928|OH1004|cDNA

ATTAGATCTCACTTTTCTCCTTCATATTCAAATATCCATGCACTATTTATTCCCTTCGACTCCAACTCTCTACCATCAACCATACTTCCACTCTTTTCATCGTTTCTTCATTCAACAATGGCGAAACTATTAGTGCTCTTCACTATCTGTCTCCTTCCCGCGCTTTTAACCGCCACAGCCATCAATAATACATTCAGCCTCAAAGGTCGCGTCTACTGCGACACTTGCCGTTGCGGATTCGAAAACACCGCCACCAAATA...

CDS

Download CDS FASTA

477 bp · LXL04_015928|LXL04_015928|OH1004|CDS

ATGGCGAAACTATTAGTGCTCTTCACTATCTGTCTCCTTCCCGCGCTTTTAACCGCCACAGCCATCAATAATACATTCAGCCTCAAAGGTCGCGTCTACTGCGACACTTGCCGTTGCGGATTCGAAAACACCGCCACCAAATACTTAGCTGGTGCGAAAGTTAGAGTAGAATGCAGAGACAGGAACTCTTTAGGCCTGAGGTACACCATGAATGCAGTAACTGATGCCACCGGAACCTACCACATCGAAGTGAATAAGGA...

Protein

Download Protein FASTA

158 aa · LXL04_015928|LXL04_015928|OH1004|PROTEIN

MAKLLVLFTICLLPALLTATAINNTFSLKGRVYCDTCRCGFENTATKYLAGAKVRVECRDRNSLGLRYTMNAVTDATGTYHIEVNKDHGDQKCECTLVGSPDPECAEPNIGRHRATVILTSNNGMNYGARYANAMGFLKKTALPGCTELIKSYFPADI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015928`
TK1151 ID	TkA02G253260
OH-1004 ID	LXL04_015928
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 80.203 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015928

Location Chr03:98696649-98697462 (-)

Description Similar to DFC: Protein DOWNSTREAM OF FLC

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10130`	Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015928 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

KEGG gene cross-reference

ath:AT5G10130

zma:542292

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.844

Rank 1 · LXL04_015928 · OH-1004

Cytoplasm0.081

Rank 2 · LXL04_015928 · OH-1004

Endoplasmic reticulum0.050

Rank 3 · LXL04_015928 · OH-1004

Cell membrane0.050

Rank 4 · LXL04_015928 · OH-1004

Lysosome / Vacuole0.029

Rank 5 · LXL04_015928 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01190.26Pollen_Ole_e_125-153 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015928	`PF01190.26`	Pollen_Ole_e_1	25	153	1.2e-47	162.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LX15`	Arabidopsis thaliana	Protein DOWNSTREAM OF FLC	45.513%	Swiss-Prot	moderate database homology

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