LXL04_015889 | RubberDandelionOmics

Gene overview

LXL04_015889

Reference: OH-1004 Chr: Chr03 Coordinates: 96218999-96223170 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1842 bp · LXL04_015889|LXL04_015889|OH1004|cDNA

ATGAACGCCCCCTCCCTTCCAAAATCCATCTCCATGCTTCCATCTCCAACGCCACTCCACACCACCAACATCAAGACAAACCAACCCCCAATCTCCCCCAAACTAAAATCTCCACGGCAGCCGGCCGTCAAGCGAGGAGGAAACAGCCACAGCAACGATATGACTTCCAGTTCTGACAAGCTTCTACTGCCCTTACCCACCAAATCTACAACCCCCAAATCCGCGATTCCGataaaaaaatcaaagaaaTGCACTACCAC...

CDS

Download CDS FASTA

1842 bp · LXL04_015889|LXL04_015889|OH1004|CDS

ATGAACGCCCCCTCCCTTCCAAAATCCATCTCCATGCTTCCATCTCCAACGCCACTCCACACCACCAACATCAAGACAAACCAACCCCCAATCTCCCCCAAACTAAAATCTCCACGGCAGCCGGCCGTCAAGCGAGGAGGAAACAGCCACAGCAACGATATGACTTCCAGTTCTGACAAGCTTCTACTGCCCTTACCCACCAAATCTACAACCCCCAAATCCGCGATTCCGATAAAAAAATCAAAGAAATGCACTACCAC...

Protein

Download Protein FASTA

613 aa · LXL04_015889|LXL04_015889|OH1004|PROTEIN

MNAPSLPKSISMLPSPTPLHTTNIKTNQPPISPKLKSPRQPAVKRGGNSHSNDMTSSSDKLLLPLPTKSTTPKSAIPIKKSKKCTTTGDHPGNFYLIHLEREATEDEHREIERFVTDNQVFQLVGNVMIVGKPNRVTYRGPTMLATTLHAMAILLRIDAKWDWFINLSASYYPLVTQDDLISAFSVLPRHLNFIQHSSRLGWKLNKRGKPIMIDPGLYSSNKSDIWWVIKQRALPTAFKLYTEYCIIGYENLPRTLLLYY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015889`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015889

Location Chr03:96218999-96223170 (+)

Description Similar to CALS9: Callose synthase 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07160`	Involved in sporophytic and gametophytic development.	Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.2008 · DOI: 10.1111/j.1365-313x.2008.03462.x
`At2g36850`	Involved in sporophytic and gametophytic development.	Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.2008 · DOI: 10.1111/j.1365-313x.2008.03462.x Dysregulation of cell-to-cell connectivity and stomatal patterning by loss-of-function mutation in Arabidopsis chorus (glucan synthase-like 8).2010 · DOI: 10.1242/dev.049197
`At5g15050`	Beta-glucuronosyltransferase involved in the biosynthesis of type II arabinogalactan (AG).	Arabidopsis thaliana glucuronosyltransferase in family GT14.2014 · DOI: 10.4161/psb.28891
`At5g39990`	Beta-glucuronosyltransferase involved in the biosynthesis of type II arabinogalactan (AG).	A β-glucuronosyltransferase from Arabidopsis thaliana involved in biosynthesis of type II arabinogalactan has a role in cell elongation during seedling growth.2013 · DOI: 10.1111/tpj.12353
`At2g37585`	Beta-glucuronosyltransferase involved in the biosynthesis of type II arabinogalactan (AG).	Arabidopsis thaliana glucuronosyltransferase in family GT14.2014 · DOI: 10.4161/psb.28891

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015889 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006075 (1->3)-beta-D-glucan biosynthetic process Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009555 pollen development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009846 pollen germination Biological Process

GO:0048589 developmental growth Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0052543 callose deposition in cell wall Biological Process

GO:0055047 generative cell mitosis Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0000139 Golgi membrane Cellular Component

KEGG gene cross-reference

ath:AT2G36850

ath:AT2G37585

ath:AT3G07160

ath:AT5G15050

ath:AT5G39990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.297

Rank 1 · LXL04_015889 · OH-1004

Endoplasmic reticulum0.164

Rank 2 · LXL04_015889 · OH-1004

Cytoplasm0.161

Rank 3 · LXL04_015889 · OH-1004

Nucleus0.160

Rank 4 · LXL04_015889 · OH-1004

Golgi apparatus0.153

Rank 5 · LXL04_015889 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02485.28Branch89-304 aa

PF14288.12FKS1_dom1522-612 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015889	`PF02485.28`	Branch	89	304	2.7e-51	175.3
LXL04_015889	`PF14288.12`	FKS1_dom1	522	612	1.1e-31	110.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFU6`	Arabidopsis thaliana	Callose synthase 9	68.354%	Swiss-Prot	moderate database homology
`Q9SJM0`	Arabidopsis thaliana	Callose synthase 10	48.726%	Swiss-Prot	moderate database homology
`Q9LFQ0`	Arabidopsis thaliana	Beta-glucuronosyltransferase GlcAT14B	58.222%	Swiss-Prot	weak database homology
`Q9FLD7`	Arabidopsis thaliana	Beta-glucuronosyltransferase GlcAT14A	57.333%	Swiss-Prot	weak database homology
`Q8S8P3`	Arabidopsis thaliana	Beta-glucuronosyltransferase GlcAT14C	47.917%	Swiss-Prot	weak database homology

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