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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_015651
Reference: OH-1004 Chr: Chr03 Coordinates: 78992066-78994438 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2373 bp · LXL04_015651|LXL04_015651|OH1004|cDNA

ATGATGATGCATACATACAAGAAAGCCCTCTCAATCGGCATCCATGGCGGTTCCAAAGTTTTAATCTCTCATTCATCCTCAACCACGGACACCGTCCTTCGTCACCTCACTCTTCACATCGACGACTTCCTCTCAATTAGACATCCTAAAACCCTCCAATCACTCACAAAGTACCACGCTTACATTATTACTACAGGACATCACTCAACTAACGGGTTCATCGGTTCAAAACTCATCTCCCTGTACGCTTATCTCCATAA...

CDS

Download CDS FASTA

2373 bp · LXL04_015651|LXL04_015651|OH1004|CDS

ATGATGATGCATACATACAAGAAAGCCCTCTCAATCGGCATCCATGGCGGTTCCAAAGTTTTAATCTCTCATTCATCCTCAACCACGGACACCGTCCTTCGTCACCTCACTCTTCACATCGACGACTTCCTCTCAATTAGACATCCTAAAACCCTCCAATCACTCACAAAGTACCACGCTTACATTATTACTACAGGACATCACTCAACTAACGGGTTCATCGGTTCAAAACTCATCTCCCTGTACGCTTATCTCCATAA...

Protein

Download Protein FASTA

790 aa · LXL04_015651|LXL04_015651|OH1004|PROTEIN

MMMHTYKKALSIGIHGGSKVLISHSSSTTDTVLRHLTLHIDDFLSIRHPKTLQSLTKYHAYIITTGHHSTNGFIGSKLISLYAYLHKPVLSKQVFDAFHGYKDVFLWNSIIKAYFSNGMYPQCLECYSSMRASTSLLPNQFTVPMVVSACAELGDLVYGMIEHNLVLKVGIFEETSAVGSSFVYMYSKCGYVESARQVFDEMHLRDVVSWTALIIGYVQNGESENGLRCVIEMYRTSGDDNRPNFRTLEGGLQACGDLSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_015651
TK1151 IDTkA02G306890
OH-1004 IDLXL04_015651
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)59.600
Protein coverage (%)TK1151 90.023 / OH-1004 78.861
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_015651
LocationChr03:78992066-78994438 (+)
DescriptionSimilar to PCMP-E98: Pentatricopeptide repeat-containing protein At4g39952, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g39952 Pentatricopeptide repeat-containing protein At4g39952, mitochondrial. No verified direct reference in this release
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At1g69350 Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial. No verified direct reference in this release
At4g21300 Pentatricopeptide repeat-containing protein At4g21300. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015651 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G18485
ath:AT3G03580
ath:AT4G39952
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.672
Rank 1 · LXL04_015651 · OH-1004
Plastid0.160
Rank 2 · LXL04_015651 · OH-1004
Nucleus0.046
Rank 3 · LXL04_015651 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_015651 · OH-1004
Cell membrane0.006
Rank 5 · LXL04_015651 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2102-151 aa
PF13041.13PPR_2310-357 aa
PF13041.13PPR_2414-456 aa
PF01535.27PPR414-441 aa
PF29070.1MSC6_N507-606 aa
PF13041.13PPR_2508-556 aa
PF01535.27PPR511-541 aa
PF17177.11PPR_long530-679 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_015651PF13041.13PPR_21021511.8e-61204.8
LXL04_015651PF13041.13PPR_23103571.8e-61204.8
LXL04_015651PF13041.13PPR_24144561.8e-61204.8
LXL04_015651PF01535.27PPR4144413.6e-61200.0
LXL04_015651PF29070.1MSC6_N5076064.9e-1452.9
LXL04_015651PF13041.13PPR_25085561.8e-61204.8
LXL04_015651PF01535.27PPR5115413.6e-61200.0
LXL04_015651PF17177.11PPR_long5306793e-0730.7
LXL04_015651PF13041.13PPR_25806101.8e-61204.8
LXL04_015651PF01535.27PPR5856103.6e-61200.0
LXL04_015651PF13041.13PPR_26106571.8e-61204.8
LXL04_015651PF01535.27PPR6136413.6e-61200.0
LXL04_015651PF20431.5E_motif7277886.6e-1349.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E9N1Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g39952, mitochondrial49.804%Swiss-Protmoderate database homology
Q9SS60Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0358034.806%Swiss-Protmoderate database homology
Q0WN60Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1848532.932%Swiss-Protmoderate database homology
Q9C507Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g69350, mitochondrial32.888%Swiss-Protmoderate database homology
Q9STE1Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g2130031.345%Swiss-Protmoderate database homology

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