LXL04_015530 | RubberDandelionOmics

Gene overview

LXL04_015530

Reference: OH-1004 Chr: Chr03 Coordinates: 75191924-75194177 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1992 bp · LXL04_015530|LXL04_015530|OH1004|cDNA

ATGCTAATCCTATTGCTTACCGTCCTTGTTCTCGCGAACCCTGGATCTTGTGATGTCAGTTTCTCGTTTGCTTCTTTTGATTCAAATAGTTGCGATCAAGATGGTGATTTAATTTGTATGGGATCGGTAAAATCAAGAAATGGGAGTTTGATTATCACTCAAGTTGAAGACGATGAACAAGTGAACATAAACAAATCATCTCCGAATTTAATCGGAAGGGTTTTGTACAAAACTCCGGTCATTGCATGGCCTGCAACCTT...

CDS

Download CDS FASTA

1992 bp · LXL04_015530|LXL04_015530|OH1004|CDS

ATGCTAATCCTATTGCTTACCGTCCTTGTTCTCGCGAACCCTGGATCTTGTGATGTCAGTTTCTCGTTTGCTTCTTTTGATTCAAATAGTTGCGATCAAGATGGTGATTTAATTTGTATGGGATCGGTAAAATCAAGAAATGGGAGTTTGATTATCACTCAAGTTGAAGACGATGAACAAGTGAACATAAACAAATCATCTCCGAATTTAATCGGAAGGGTTTTGTACAAAACTCCGGTCATTGCATGGCCTGCAACCTT...

Protein

Download Protein FASTA

663 aa · LXL04_015530|LXL04_015530|OH1004|PROTEIN

MLILLLTVLVLANPGSCDVSFSFASFDSNSCDQDGDLICMGSVKSRNGSLIITQVEDDEQVNINKSSPNLIGRVLYKTPVIAWPATFSTTFTIRIVVDPYSALSGDGMAFIIAQDNQPSPQQSYGSYIGILAPSTQSGTLRQLAVELDTYKNEYVSDPDGNHIAIDTISIQDPVVVKSLEKTGIDLKSGREITVQITYDGWEKKLKILVAYTGEPLFEIINQRIIMKKTVPRQVYVGFTGATGGAQESHRVINWNFSSTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015530`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015530

Location Chr03:75191924-75194177 (+)

Description Similar to LECRKS7: Probable L-type lectin-domain containing receptor kinase S.7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55830`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At5g06740`	Probable L-type lectin-domain containing receptor kinase S.5.	No verified direct reference in this release
`At3g55550`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At5g03140`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At5g10530`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015530 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G55550

ath:AT5G03140

ath:AT5G06740

ath:AT5G10530

ath:AT5G55830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.833

Rank 1 · LXL04_015530 · OH-1004

Endoplasmic reticulum0.087

Rank 2 · LXL04_015530 · OH-1004

Cytoplasm0.086

Rank 3 · LXL04_015530 · OH-1004

Nucleus0.045

Rank 4 · LXL04_015530 · OH-1004

Lysosome / Vacuole0.040

Rank 5 · LXL04_015530 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139.27Lectin_legB19-264 aa

PF18483.9Lectin_L-type_dom57-251 aa

PF00069.32Pkinase344-604 aa

PF07714.24PK_Tyr_Ser-Thr346-604 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015530	`PF00139.27`	Lectin_legB	19	264	4.7e-45	154.8
LXL04_015530	`PF18483.9`	Lectin_L-type_dom	57	251	1.2e-14	55.4
LXL04_015530	`PF00069.32`	Pkinase	344	604	3e-44	152.1
LXL04_015530	`PF07714.24`	PK_Tyr_Ser-Thr	346	604	1.5e-39	136.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FHG4`	Arabidopsis thaliana	Probable L-type lectin-domain containing receptor kinase S.7	35.830%	Swiss-Prot	moderate database homology
`Q9FG33`	Arabidopsis thaliana	Probable L-type lectin-domain containing receptor kinase S.5	37.309%	Swiss-Prot	moderate database homology
`Q9M2S4`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase S.4	34.603%	Swiss-Prot	moderate database homology
`Q9LYX1`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase VIII.2	36.378%	Swiss-Prot	moderate database homology
`Q9LXA5`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase IX.1	35.135%	Swiss-Prot	moderate database homology

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