LXL04_015410 | RubberDandelionOmics

Gene overview

LXL04_015410

Reference: OH-1004 Chr: Chr03 Coordinates: 71161219-71165317 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1677 bp · LXL04_015410|LXL04_015410|OH1004|cDNA

ATGCACTCCTTAATCTCTACATCGCCAATTTCCACACCATACGAACCCTATACTTCACTCACCGCTCTTCCACCTTCTCCGGCACCTTTCAGTCTCCGTTTCTGCGGTCTAAAACGAGAGGCTCTACAGTTATCACAGCCCAAATACAGAGTACTCGGTGTTTCATCAAAGAGGATCGGGAATTATGTTACAGCAGCTTCTTCAGGCAGCAATGGGAGTCCTCCAAAGTCGTTTGATTATGATCTGGTGATAATCGGAGC...

CDS

Download CDS FASTA

1677 bp · LXL04_015410|LXL04_015410|OH1004|CDS

ATGCACTCCTTAATCTCTACATCGCCAATTTCCACACCATACGAACCCTATACTTCACTCACCGCTCTTCCACCTTCTCCGGCACCTTTCAGTCTCCGTTTCTGCGGTCTAAAACGAGAGGCTCTACAGTTATCACAGCCCAAATACAGAGTACTCGGTGTTTCATCAAAGAGGATCGGGAATTATGTTACAGCAGCTTCTTCAGGCAGCAATGGGAGTCCTCCAAAGTCGTTTGATTATGATCTGGTGATAATCGGAGC...

Protein

Download Protein FASTA

558 aa · LXL04_015410|LXL04_015410|OH1004|PROTEIN

MHSLISTSPISTPYEPYTSLTALPPSPAPFSLRFCGLKREALQLSQPKYRVLGVSSKRIGNYVTAASSGSNGSPPKSFDYDLVIIGAGVGGHGAALHAVEKGLKTAIIEGDVIGGTCVNRGCVPSKALLAVSGRMRELQDDHHMKALGIQVSGAGYNRQAVADHASNLASKIRNNLVNSLTALGVDILTGFGSILGPQKVKYGKDNVITAKDIIIATGSVPFVPKGIEVDGKTVVTSDHALKLEFVPDWIAIVGSGYIGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015410`
TK1151 ID	TkA02G336510
OH-1004 ID	LXL04_015410
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.300
Protein coverage (%)	TK1151 99.381 / OH-1004 57.527 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015410

Location Chr03:71161219-71165317 (+)

Description Similar to LPD1: Dihydrolipoyl dehydrogenase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16950`	Lipoamide dehydrogenase is a component of the plastidial pyruvate dehydrogenase complex (PDC).	No verified direct reference in this release
`At4g16155`	Lipoamide dehydrogenase is a component of the plastidial pyruvate dehydrogenase complex (PDC).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015410 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006103 2-oxoglutarate metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0045333 cellular respiration Biological Process

GO:0046685 response to arsenic-containing substance Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G16950

ath:AT4G16155

cel:CELE_LLC1.3

syn:slr1096

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.902

Rank 1 · LXL04_015410 · OH-1004

Mitochondrion0.136

Rank 2 · LXL04_015410 · OH-1004

Cytoplasm0.022

Rank 3 · LXL04_015410 · OH-1004

Nucleus0.014

Rank 4 · LXL04_015410 · OH-1004

Cell membrane0.009

Rank 5 · LXL04_015410 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07992.21Pyr_redox_280-411 aa

PF12831.14FAD_oxidored81-143 aa

PF01134.29GIDA81-219 aa

PF00070.34Pyr_redox250-326 aa

PF02852.29Pyr_redox_dim430-541 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015410	`PF07992.21`	Pyr_redox_2	80	411	1.1e-60	206.2
LXL04_015410	`PF12831.14`	FAD_oxidored	81	143	1.6e-06	28.4
LXL04_015410	`PF01134.29`	GIDA	81	219	4.9e-06	26.6
LXL04_015410	`PF00070.34`	Pyr_redox	250	326	1.6e-17	64.5
LXL04_015410	`PF02852.29`	Pyr_redox_dim	430	541	4.4e-32	111.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A8MS68`	Arabidopsis thaliana	Dihydrolipoyl dehydrogenase 1, chloroplastic	84.601%	Swiss-Prot	strong database homology
`F4JLP5`	Arabidopsis thaliana	Dihydrolipoyl dehydrogenase 2, chloroplastic	82.299%	Swiss-Prot	strong database homology

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