LXL04_015348 | RubberDandelionOmics

Gene overview

LXL04_015348

Reference: OH-1004 Chr: Chr03 Coordinates: 69145522-69154027 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5702 bp · LXL04_015348|LXL04_015348|OH1004|cDNA

ATGGTGAAAGATAGTTTGAAGAACAGTCAAGCTGAGGGAAACGAGAATCAGTTCGACAAGACAATGTCGAACTCGAATCCAATCGATGTTCCTCTTCCAAGAAATCCGTTGAACGCGATACCAGATCCATCTCAATTCTCCAAGGAATTTCTTCAAGAGGTTGTGAATCACAATGGGTTTAGGGATAAATCTCTAGAAGCTGGTTCTATTTCTAACCGAAGGAAATTTGATTCCGCGCACAGTACACCAGCTAGAAGTGT...

CDS

Download CDS FASTA

5682 bp · LXL04_015348|LXL04_015348|OH1004|CDS

ATGGTGAAAGATAGTTTGAAGAACAGTCAAGCTGAGGGAAACGAGAATCAGTTCGACAAGACAATGTCGAACTCGAATCCAATCGATGTTCCTCTTCCAAGAAATCCGTTGAACGCGATACCAGATCCATCTCAATTCTCCAAGGAATTTCTTCAAGAGGTTGTGAATCACAATGGGTTTAGGGATAAATCTCTAGAAGCTGGTTCTATTTCTAACCGAAGGAAATTTGATTCCGCGCACAGTACACCAGCTAGAAGTGT...

Protein

Download Protein FASTA

1893 aa · LXL04_015348|LXL04_015348|OH1004|PROTEIN

MVKDSLKNSQAEGNENQFDKTMSNSNPIDVPLPRNPLNAIPDPSQFSKEFLQEVVNHNGFRDKSLEAGSISNRRKFDSAHSTPARSVSRTTYIGQLGACTGPRALQSAGERGASSSRVSRRISNVNCEPQPTEVTHFELVENPSFWNDHNVQVLIRMRPLSNMEKMAQGYVRCLKQESLQTLAWLGHPEVRFTFDHIVSETISQEKLFRVAGLPMVDNCMSGYNSCMFAYGQTGSGKTYTMMGEISQQDGKLVDDCGITP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015348`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015348

Location Chr03:69145522-69154027 (-)

Description Similar to KIN12C: Kinesin-like protein KIN-12C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17360`	Involved in the spatial control of cytokinesis by a proper phragmoplast guidance.	Two kinesins are involved in the spatial control of cytokinesis in Arabidopsis thaliana.2006 · DOI: 10.1016/j.cub.2006.03.034 Tangled localization at the cortical division site of plant cells occurs by several mechanisms.2011 · DOI: 10.1242/jcs.073676
`At3g19050`	Involved in the spatial control of cytokinesis by a proper phragmoplast guidance.	Two kinesins are involved in the spatial control of cytokinesis in Arabidopsis thaliana.2006 · DOI: 10.1016/j.cub.2006.03.034

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0590500`	Kinesin-like protein KIN-12F.	No verified direct reference in this release
`Os07g0638000`	Kinesin-like protein KIN-12E.	No verified direct reference in this release
`UniProt: Q75LL2`	Kinesin-like protein KIN-12G.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015348 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0005874 microtubule Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0032153 cell division site Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT3G17360

dosa:Os07g0638000

dosa:Os12g0590500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.653

Rank 1 · LXL04_015348 · OH-1004

Nucleus0.251

Rank 2 · LXL04_015348 · OH-1004

Cell membrane0.130

Rank 3 · LXL04_015348 · OH-1004

Golgi apparatus0.106

Rank 4 · LXL04_015348 · OH-1004

Lysosome / Vacuole0.046

Rank 5 · LXL04_015348 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796.12Microtub_bd152-302 aa

PF00225.30Kinesin156-486 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015348	`PF16796.12`	Microtub_bd	152	302	1e-20	75.0
LXL04_015348	`PF00225.30`	Kinesin	156	486	8.6e-109	364.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q27IK7`	Arabidopsis thaliana	Kinesin-like protein KIN-12C	48.730%	Swiss-Prot	moderate database homology
`Q27IK6`	Arabidopsis thaliana	Kinesin-like protein KIN-12D	51.766%	Swiss-Prot	weak database homology
`B9GE13`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-12F	43.013%	Swiss-Prot	weak database homology
`B9FUF9`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-12E	55.376%	Swiss-Prot	weak database homology
`Q75LL2`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-12G	49.615%	Swiss-Prot	weak database homology

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