Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2841 bp · LXL04_015244|LXL04_015244|OH1004|cDNA
ATGGATCAATTCGATGCGTTTTTCCGAAGAGCTGATTTGGATCATGATGGAAGAATCAGTGGAGCTGAAGCTGTTGCTTTTTTTCAGGGTTCTAATTTACCTAAGCCAGTGCTTGCTCAGATATGGCAGCATGCTGATCACAACCGCATTGGGTTCCTTGGTCGCCAAGAATTCTACAATGCCCTTAAACTTGTAACTGTGGCACAAAGTAGAAGAGAACTAACACCAGATTTAGTCAAAGCAGCATTGTACGGGCCCGC...
2841 bp · LXL04_015244|LXL04_015244|OH1004|CDS
ATGGATCAATTCGATGCGTTTTTCCGAAGAGCTGATTTGGATCATGATGGAAGAATCAGTGGAGCTGAAGCTGTTGCTTTTTTTCAGGGTTCTAATTTACCTAAGCCAGTGCTTGCTCAGATATGGCAGCATGCTGATCACAACCGCATTGGGTTCCTTGGTCGCCAAGAATTCTACAATGCCCTTAAACTTGTAACTGTGGCACAAAGTAGAAGAGAACTAACACCAGATTTAGTCAAAGCAGCATTGTACGGGCCCGC...
Protein
Download Protein FASTA946 aa · LXL04_015244|LXL04_015244|OH1004|PROTEIN
MDQFDAFFRRADLDHDGRISGAEAVAFFQGSNLPKPVLAQIWQHADHNRIGFLGRQEFYNALKLVTVAQSRRELTPDLVKAALYGPASAKIPPPQINLSALAPSQPNPMAPPRPGIANSIPPSQPPNPIGPRPGIVNSIPPQTFGIRGQAPPPSSVQFPTSQNQSVRPTPGSPLSVPPQGVSYPPGGGLSGPGVPTPRPSLGSGNISDAMFGGDMFSASKPSPSPSPSPSPSPSPSPSPIPTQTATSEPVKIDPLGALSA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015244 |
|---|---|
| TK1151 ID | TkA02G352900 |
| OH-1004 ID | LXL04_015244 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 94.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015244 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:66738298-66744213 (+) | |||||||||
| Description | Similar to SPBC800.10c: Uncharacterized calcium-binding protein C800.10c (Schizosaccharomyces pombe (strain 972 / ATCC 24843) | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0006897 endocytosis Biological Process GO:0016197 endosomal transport Biological Process GO:0032956 regulation of actin cytoskeleton organization Biological Process GO:0051260 protein homooligomerization Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0005938 cell cortex Cellular Component GO:0009506 plasmodesma Cellular Component GO:0010008 endosome membrane Cellular Component GO:0016020 membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G05520 spo:2540824 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12763.14EH3-70 aaPF13499.13EF-hand_77-62 aaPF12763.14EH309-388 aaPF13499.13EF-hand_7313-370 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015244 | PF12763.14 | EH | 3 | 70 | 1.3e-24 | 86.7 |
| LXL04_015244 | PF13499.13 | EF-hand_7 | 7 | 62 | 2.6e-13 | 50.8 |
| LXL04_015244 | PF12763.14 | EH | 309 | 388 | 1.3e-24 | 86.7 |
| LXL04_015244 | PF13499.13 | EF-hand_7 | 313 | 370 | 2.6e-13 | 50.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.