LXL04_015163 | RubberDandelionOmics

Gene overview

LXL04_015163

Reference: OH-1004 Chr: Chr03 Coordinates: 65159210-65162180 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2622 bp · LXL04_015163|LXL04_015163|OH1004|cDNA

ATGGACAAATTCAGAAAATCTTTCAACAAATCACCACAAAACGAACCACAGATCGAGCCTGAAGAAAAGCAAATCCTGCTTCACGGAAACGAGTACGCCGTTGATCGACTTCCGTCAGCTGCTGCCGTTACTACTATGCCTTCATCTCCGCCACTTCCAGATTCCGGTGAACGGCGGAGAGATACAGGTAAGGGTGCAAACGGTAATGTCGATCGTTCGAAAGAAGCAGAGCTGGCGACATACAAGTTAAACTCGGCTCC...

CDS

Download CDS FASTA

2622 bp · LXL04_015163|LXL04_015163|OH1004|CDS

ATGGACAAATTCAGAAAATCTTTCAACAAATCACCACAAAACGAACCACAGATCGAGCCTGAAGAAAAGCAAATCCTGCTTCACGGAAACGAGTACGCCGTTGATCGACTTCCGTCAGCTGCTGCCGTTACTACTATGCCTTCATCTCCGCCACTTCCAGATTCCGGTGAACGGCGGAGAGATACAGGTAAGGGTGCAAACGGTAATGTCGATCGTTCGAAAGAAGCAGAGCTGGCGACATACAAGTTAAACTCGGCTCC...

Protein

Download Protein FASTA

873 aa · LXL04_015163|LXL04_015163|OH1004|PROTEIN

MDKFRKSFNKSPQNEPQIEPEEKQILLHGNEYAVDRLPSAAAVTTMPSSPPLPDSGERRRDTGKGANGNVDRSKEAELATYKLNSAPDQQNPNTVWRESSYDFSKDGDKFDFFTSNTPSPQQSPALSRIAESPNHYGMLTPKEVRVSFHDEVIEPQPLRQRSNGSGSGRGGGEGGAGGGGEEVVICSANASFKRRSSLMRTKTKSRLMDPPETDQKSGRLYKSGILGKGGSEIDEDDPFTDDDLPDEYKQLRYSKWTLLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015163`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015163

Location Chr03:65159210-65162180 (+)

Description Similar to MSL8: Mechanosensitive ion channel protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17010`	Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.	No verified direct reference in this release
`At1g78610`	Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.	No verified direct reference in this release
`At1g53470`	Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.	No verified direct reference in this release
`At3g14810`	Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.	No verified direct reference in this release
`At2g17000`	Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015163 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006820 monoatomic anion transport Biological Process

GO:0009846 pollen germination Biological Process

GO:0009859 pollen hydration Biological Process

GO:0050982 detection of mechanical stimulus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0008381 mechanosensitive monoatomic ion channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G53470

ath:AT1G78610

ath:AT2G17000

ath:AT2G17010

ath:AT3G14810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.848

Rank 1 · LXL04_015163 · OH-1004

Cytoplasm0.091

Rank 2 · LXL04_015163 · OH-1004

Endoplasmic reticulum0.085

Rank 3 · LXL04_015163 · OH-1004

Lysosome / Vacuole0.037

Rank 4 · LXL04_015163 · OH-1004

Nucleus0.036

Rank 5 · LXL04_015163 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00924.25MS_channel_2nd690-747 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015163	`PF00924.25`	MS_channel_2nd	690	747	7.8e-12	45.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IME2`	Arabidopsis thaliana	Mechanosensitive ion channel protein 8	60.375%	Swiss-Prot	strong database homology
`Q9SYM1`	Arabidopsis thaliana	Mechanosensitive ion channel protein 6	55.784%	Swiss-Prot	strong database homology
`Q9LPG3`	Arabidopsis thaliana	Mechanosensitive ion channel protein 4	55.756%	Swiss-Prot	strong database homology
`Q9LH74`	Arabidopsis thaliana	Mechanosensitive ion channel protein 5	57.392%	Swiss-Prot	strong database homology
`F4IME1`	Arabidopsis thaliana	Mechanosensitive ion channel protein 7	55.000%	Swiss-Prot	strong database homology

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