LXL04_015144 | RubberDandelionOmics

Gene overview

LXL04_015144

Reference: OH-1004 Chr: Chr03 Coordinates: 64866140-64868043 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_015144|LXL04_015144|OH1004|cDNA

ATGCTTCCTTTTTTTGTGACATGTTCCCAACCATCGTTTTTtacatttaattatatatattttaatgatCCTGAATGTGGTTTAATTTTGAAGATGGATCGGTACCATAAAGTGGAAAAACCAAGAGGAGAGCAACCAATTGATGAGAATGAGATCCGAATCACCAGCCAAGGAAGAATGCGCAACTATATCACCTATGCCATGGGTTTGCTTCAGGAAAAAGGCTCATCAGAAGTTGTATTCAAAGCAATGGGCAGAGC...

CDS

Download CDS FASTA

876 bp · LXL04_015144|LXL04_015144|OH1004|CDS

ATGCTTCCTTTTTTTGTGACATGTTCCCAACCATCGTTTTTTACATTTAATTATATATATTTTAATGATCCTGAATGTGGTTTAATTTTGAAGATGGATCGGTACCATAAAGTGGAAAAACCAAGAGGAGAGCAACCAATTGATGAGAATGAGATCCGAATCACCAGCCAAGGAAGAATGCGCAACTATATCACCTATGCCATGGGTTTGCTTCAGGAAAAAGGCTCATCAGAAGTTGTATTCAAAGCAATGGGCAGAGC...

Protein

Download Protein FASTA

291 aa · LXL04_015144|LXL04_015144|OH1004|PROTEIN

MLPFFVTCSQPSFFTFNYIYFNDPECGLILKMDRYHKVEKPRGEQPIDENEIRITSQGRMRNYITYAMGLLQEKGSSEVVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDIIDTWEPLEEGLLPLETTRHVSMITVTLSLKELNTSSIGYQPPLPADQVKLTPDFEYEGEGSPTTRGRGRGGRGRGRGRSRANGYGAGEYDDGGWDGPHDFPRGRGGRGRGRSFRGRGRGNYNNAPSYADNEYDGGYNQEPPMQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015144`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_015144`
Location	Chr03:64866140-64868043 (-)
Description	Similar to Rpp25l: Ribonuclease P protein subunit p25-like protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_015144` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0001682 tRNA 5'-leader removal Biological Process GO:0006364 rRNA processing Biological Process GO:0006417 regulation of translation Biological Process GO:0000172 ribonuclease MRP complex Cellular Component GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005655 nucleolar ribonuclease P complex Cellular Component GO:0005737 cytoplasm Cellular Component GO:0030681 multimeric ribonuclease P complex Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	bta:512203 hsa:138716 mmu:69961 pfa:PF3D7_0814200 rno:315705 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.653

Rank 1 · LXL04_015144 · OH-1004

Nucleus0.470

Rank 2 · LXL04_015144 · OH-1004

Endoplasmic reticulum0.089

Rank 3 · LXL04_015144 · OH-1004

Mitochondrion0.074

Rank 4 · LXL04_015144 · OH-1004

Cell membrane0.061

Rank 5 · LXL04_015144 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01918.28Alba50-114 aa

PF12328.14Rpp2072-141 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015144	`PF01918.28`	Alba	50	114	4.5e-20	71.9
LXL04_015144	`PF12328.14`	Rpp20	72	141	3.7e-06	27.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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