LXL04_015136 | RubberDandelionOmics

Gene overview

LXL04_015136

Reference: OH-1004 Chr: Chr03 Coordinates: 64729478-64731315 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

804 bp · LXL04_015136|LXL04_015136|OH1004|cDNA

ATGGAGAAGGCCACTGCAAAATTTACCCTTGGAACAACCCATCAAGAGATGAAAGTTGAACGCCAGAGTTGTGATAGAATAAGTGCTCTTTCCCAAGACACGATCGAAAAAATTCTTACTCTGATGCCTATCCGAGATGCGTTGAGGACGAGCATATTGTCAAGGAAATGGAGGACCATTCCGAAACTTAAGTTTGATGACAGTCAGCTAGTTGTACTTTCTGATAACGAAGAAATCAATGAATATAAGTTTGTCAAAGG...

CDS

Download CDS FASTA

804 bp · LXL04_015136|LXL04_015136|OH1004|CDS

ATGGAGAAGGCCACTGCAAAATTTACCCTTGGAACAACCCATCAAGAGATGAAAGTTGAACGCCAGAGTTGTGATAGAATAAGTGCTCTTTCCCAAGACACGATCGAAAAAATTCTTACTCTGATGCCTATCCGAGATGCGTTGAGGACGAGCATATTGTCAAGGAAATGGAGGACCATTCCGAAACTTAAGTTTGATGACAGTCAGCTAGTTGTACTTTCTGATAACGAAGAAATCAATGAATATAAGTTTGTCAAAGG...

Protein

Download Protein FASTA

267 aa · LXL04_015136|LXL04_015136|OH1004|PROTEIN

MEKATAKFTLGTTHQEMKVERQSCDRISALSQDTIEKILTLMPIRDALRTSILSRKWRTIPKLKFDDSQLVVLSDNEEINEYKFVKGMFHVLLLHRAPILEFSLSINNEYIGICSEIDQIILHLSKNSDIKKFLFENLIPETGYYPLPCSFFSLHGLEHLDLSFCIFEPPSMYKGSSKLKSLCFTNVFITNQMVLGFLANCPILVEFSWTNVDVDLNEGELVDLFTRLPCWIQLPRSQVKLPCEASKKPKSSLPLIKPLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015136`
TK1151 ID	TkA02G362620
OH-1004 ID	LXL04_015136
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 67.416 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015136

Location Chr03:64729478-64731315 (+)

Description Similar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13570`	F-box/FBD/LRR-repeat protein At1g13570.	No verified direct reference in this release
`At5g56440`	Putative FBD-associated F-box protein At5g56440.	No verified direct reference in this release
`At2g04230`	F-box/FBD/LRR-repeat protein At2g04230.	No verified direct reference in this release
`At4g13965`	Putative F-box/FBD/LRR-repeat protein At4g13965.	No verified direct reference in this release
`At1g55030`	Putative FBD-associated F-box protein At1g55030.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015136 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G13570

ath:AT1G55030

ath:AT2G04230

ath:AT5G56440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.731

Rank 1 · LXL04_015136 · OH-1004

Cytoplasm0.330

Rank 2 · LXL04_015136 · OH-1004

Endoplasmic reticulum0.047

Rank 3 · LXL04_015136 · OH-1004

Cell membrane0.043

Rank 4 · LXL04_015136 · OH-1004

Mitochondrion0.023

Rank 5 · LXL04_015136 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box27-60 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015136	`PF00646.39`	F-box	27	60	1e-05	25.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ70`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g13570	36.735%	Swiss-Prot	moderate database homology
`Q9FM87`	Arabidopsis thaliana	Putative FBD-associated F-box protein At5g56440	34.211%	Swiss-Prot	moderate database homology
`Q6NKX3`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At2g04230	31.429%	Swiss-Prot	moderate database homology
`Q3EA38`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At4g13965	28.191%	Swiss-Prot	weak database homology
`Q9C7M1`	Arabidopsis thaliana	Putative FBD-associated F-box protein At1g55030	29.787%	Swiss-Prot	weak database homology

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