LXL04_015019 | RubberDandelionOmics

Gene overview

LXL04_015019

Reference: OH-1004 Chr: Chr03 Coordinates: 61685111-61688990 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1533 bp · LXL04_015019|LXL04_015019|OH1004|cDNA

ATGGCGTCCCTCCCCACCTGCTCCGCCGCAGAACTTACCCCTCTCCTGGGCTTAGCCGCCAATGCCACAGCTGCAGCCGACTACATCTGCACCCGCTTCACCGCCACCGCCGATCAATTCACTAACACCACATACGCCATTGACAACACATACCTCCTCTTTTCAGCATACCTCGTGTTCGCTATGCAGCTCGGATTCGCCATGCTGTGTGCAGGGTCCGTACGGGCTAAAAACACCATGAACATCATGCTCACCAACGT...

CDS

Download CDS FASTA

1533 bp · LXL04_015019|LXL04_015019|OH1004|CDS

ATGGCGTCCCTCCCCACCTGCTCCGCCGCAGAACTTACCCCTCTCCTGGGCTTAGCCGCCAATGCCACAGCTGCAGCCGACTACATCTGCACCCGCTTCACCGCCACCGCCGATCAATTCACTAACACCACATACGCCATTGACAACACATACCTCCTCTTTTCAGCATACCTCGTGTTCGCTATGCAGCTCGGATTCGCCATGCTGTGTGCAGGGTCCGTACGGGCTAAAAACACCATGAACATCATGCTCACCAACGT...

Protein

Download Protein FASTA

510 aa · LXL04_015019|LXL04_015019|OH1004|PROTEIN

MASLPTCSAAELTPLLGLAANATAAADYICTRFTATADQFTNTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGISYYIFGFAFAFGGPSNGFIGKHYFGLKSIPSSVFDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWVWSSDGWASASRTSGSLLFGSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSGSLVVLGTFLLWFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015019`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015019

Location Chr03:61685111-61688990 (-)

Description Similar to AMT1-2: Ammonium transporter 1 member 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64780`	Ammonium transporter probably involved in ammonium uptake from the soil.	No verified direct reference in this release
`At4g13510`	High affinity ammonium transporter probably involved in ammonium uptake from the soil, long-distance transport to the shoots and re-uptake of apoplastic ammonium that derives from photorespiration in shoots.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0620600`	Ammonium transporter probably involved in ammonium uptake from the soil and ammonium uptake and retrieval in the vascular system.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015019 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009413 response to flooding Biological Process

GO:0009624 response to nematode Biological Process

GO:0010311 lateral root formation Biological Process

GO:0015843 methylammonium transport Biological Process

GO:0051258 protein polymerization Biological Process

GO:0072488 ammonium transmembrane transport Biological Process

GO:0080181 lateral root branching Biological Process

GO:0097272 ammonium homeostasis Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0008519 ammonium channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G64780

ath:AT4G13510

dosa:Os02g0620600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.849

Rank 1 · LXL04_015019 · OH-1004

Cytoplasm0.127

Rank 2 · LXL04_015019 · OH-1004

Endoplasmic reticulum0.050

Rank 3 · LXL04_015019 · OH-1004

Lysosome / Vacuole0.049

Rank 4 · LXL04_015019 · OH-1004

Golgi apparatus0.035

Rank 5 · LXL04_015019 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00909.27Ammonium_transp51-472 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015019	`PF00909.27`	Ammonium_transp	51	472	8.6e-134	446.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZPJ8`	Arabidopsis thaliana	Ammonium transporter 1 member 2	79.461%	Swiss-Prot	strong database homology
`P54144`	Arabidopsis thaliana	Ammonium transporter 1 member 1	76.285%	Swiss-Prot	strong database homology
`Q6K9G1`	Oryza sativa subsp. japonica	Ammonium transporter 1 member 2	76.566%	Swiss-Prot	strong database homology

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