Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2253 bp · LXL04_014787|LXL04_014787|OH1004|cDNA
ATGGCTTCTCCTCTGAGAAAGTTCTTGCTTAAAAGCACTTCCGGTAATGTCATTGTCCGGCGTGAAATGAGGAGAGCCAAATCCGACTCTACCACCAAAATGCAGATTATGATTCGATCTTTCGAATCAATTGACAAAAACCTTCATTGGGAGCTTCCACCTGGCACACGTAAGATTGGATTGCCTTCAACACGATCCCTGTTCACTGTGTTAAAATCACCTCATGTTCATAAAAAGGCAAGAGAACAATTTCAAATGAA...
2253 bp · LXL04_014787|LXL04_014787|OH1004|CDS
ATGGCTTCTCCTCTGAGAAAGTTCTTGCTTAAAAGCACTTCCGGTAATGTCATTGTCCGGCGTGAAATGAGGAGAGCCAAATCCGACTCTACCACCAAAATGCAGATTATGATTCGATCTTTCGAATCAATTGACAAAAACCTTCATTGGGAGCTTCCACCTGGCACACGTAAGATTGGATTGCCTTCAACACGATCCCTGTTCACTGTGTTAAAATCACCTCATGTTCATAAAAAGGCAAGAGAACAATTTCAAATGAA...
Protein
Download Protein FASTA750 aa · LXL04_014787|LXL04_014787|OH1004|PROTEIN
MASPLRKFLLKSTSGNVIVRREMRRAKSDSTTKMQIMIRSFESIDKNLHWELPPGTRKIGLPSTRSLFTVLKSPHVHKKAREQFQMKINKEMLVMETKRHELRKKFFWLKRQRIFGAQFEIMFSFKTRLDKAQLQKVLHPGLKDISKDNKVEEHSVMMALNSLAQEGSYSDAVDASLNSIKSSSLVNNTGSFPHGLALMLRSVPMELLKARVDKEGSRAVAPQLIEKFILNNPHRPTVIAQPDPEKVSQHESVKKYNLEK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_014787 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_014787 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:56970855-56974114 (+) | |||||||||
| Description | Similar to PREP1: Presequence protease 1, chloroplastic/mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0016485 protein processing Biological Process GO:0051603 proteolysis involved in protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005758 mitochondrial intermembrane space Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009941 chloroplast envelope Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G49630 ath:AT3G19170 cpe:CPE1402 spo:2540111 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00338.28Ribosomal_S1058-101 aaPF08367.17M16C_assoc241-484 aaPF22516.2PreP_C557-730 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_014787 | PF00338.28 | Ribosomal_S10 | 58 | 101 | 1.1e-07 | 32.8 |
| LXL04_014787 | PF08367.17 | M16C_assoc | 241 | 484 | 2.5e-61 | 207.8 |
| LXL04_014787 | PF22516.2 | PreP_C | 557 | 730 | 1.4e-75 | 253.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.