LXL04_014732 | RubberDandelionOmics

Gene overview

LXL04_014732

Reference: OH-1004 Chr: Chr03 Coordinates: 55887919-55889239 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

426 bp · LXL04_014732|LXL04_014732|OH1004|cDNA

ATGGCTGCAATTTACAGTCTTTACATCATCAACAAATCAGGGGGTCTCATCTTTTACAAGGATTATGGGTTAGCGGGCAGAATGGATACGAACGATAGCTTGCGATTGGCAAGTTTGTGGCATTCGATGCACGCTATCTCTCAGCAATTGTCCCCAATTTCCGGATGCTCGGGTATCGAACTCCTCGAAGCCGACACATTTGATCTTCACTGCTTTCAGTCTCTCACAGGGACAAAGTTTTTcgtggtatcagagcctgg...

CDS

Download CDS FASTA

426 bp · LXL04_014732|LXL04_014732|OH1004|CDS

ATGGCTGCAATTTACAGTCTTTACATCATCAACAAATCAGGGGGTCTCATCTTTTACAAGGATTATGGGTTAGCGGGCAGAATGGATACGAACGATAGCTTGCGATTGGCAAGTTTGTGGCATTCGATGCACGCTATCTCTCAGCAATTGTCCCCAATTTCCGGATGCTCGGGTATCGAACTCCTCGAAGCCGACACATTTGATCTTCACTGCTTTCAGTCTCTCACAGGGACAAAGTTTTTCGTGGTATCAGAGCCTGG...

Protein

Download Protein FASTA

141 aa · LXL04_014732|LXL04_014732|OH1004|PROTEIN

MAAIYSLYIINKSGGLIFYKDYGLAGRMDTNDSLRLASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVSEPGTQNMENLLKHIYELYTDYVLKNPFYEMEMPIRCELFDINLAQAIQKDRVAYLGR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014732`
TK1151 ID	TkA02G401290
OH-1004 ID	LXL04_014732
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_014732`
Location	Chr03:55887919-55889239 (+)
Description	Similar to trappc4: Trafficking protein particle complex subunit 4
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014732` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0006901 vesicle coating Biological Process GO:0006914 autophagy Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0048208 COPII vesicle coating Biological Process GO:0099022 vesicle tethering Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005795 Golgi stack Cellular Component GO:0005886 plasma membrane Cellular Component GO:0030008 TRAPP complex Cellular Component
KEGG gene cross-reference	bta:785345 ddi:DDB_G0280827 mmu:60409 pon:100172851 rno:367073 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.509

Rank 1 · LXL04_014732 · OH-1004

Golgi apparatus0.289

Rank 2 · LXL04_014732 · OH-1004

Lysosome / Vacuole0.215

Rank 3 · LXL04_014732 · OH-1004

Nucleus0.197

Rank 4 · LXL04_014732 · OH-1004

Endoplasmic reticulum0.085

Rank 5 · LXL04_014732 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04099.19Sybindin4-133 aa

PF04628.20Sedlin_N42-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014732	`PF04099.19`	Sybindin	4	133	2.7e-52	177.3
LXL04_014732	`PF04628.20`	Sedlin_N	42	133	1.5e-07	32.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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