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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_014661
Reference: OH-1004 Chr: Chr03 Coordinates: 54520884-54523552 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1749 bp · LXL04_014661|LXL04_014661|OH1004|cDNA

ATGGTTGCTTCTTATTTTCCCTTTCGCGTTCTCAGAAACTACAAACTCCTTTTGTGCTTTCGTGTTTATTGGCTTCCTTGCTATGCAAACACCACCGCCAATTGTTTTCATTCAGCTACCAAGTTCAAACAGACCAAACCCACAAAGCAAATCACCAGAAAGTTCAAAAAAACCAACAAATCAAAATTCAAAGAGAATGTAGTAAACCCAAGGGTGTACATGAAAGATACAGTCAGAACCATATCAAACATACTTAGGTA...

CDS

Download CDS FASTA

1749 bp · LXL04_014661|LXL04_014661|OH1004|CDS

ATGGTTGCTTCTTATTTTCCCTTTCGCGTTCTCAGAAACTACAAACTCCTTTTGTGCTTTCGTGTTTATTGGCTTCCTTGCTATGCAAACACCACCGCCAATTGTTTTCATTCAGCTACCAAGTTCAAACAGACCAAACCCACAAAGCAAATCACCAGAAAGTTCAAAAAAACCAACAAATCAAAATTCAAAGAGAATGTAGTAAACCCAAGGGTGTACATGAAAGATACAGTCAGAACCATATCAAACATACTTAGGTA...

Protein

Download Protein FASTA

582 aa · LXL04_014661|LXL04_014661|OH1004|PROTEIN

MVASYFPFRVLRNYKLLLCFRVYWLPCYANTTANCFHSATKFKQTKPTKQITRKFKKTNKSKFKENVVNPRVYMKDTVRTISNILRYSTWDSAQQQLQTLSIKWDSYTINQVLKTHPPMEKAWLFFNWASGLKHFKHDQYTYTTMMDIFGEARRISSMRFVFQQMEEKGITVDVVTYTSMLHWLSNDGDVDGSVKLWEEMKEKGIYPTVVSYTAYMKVLFDHGRVNEATKVYRDMIRSGCPPNCHTYTILMEHLASSGKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_014661
TK1151 IDTkA02G406040
OH-1004 IDLXL04_014661
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_014661
LocationChr03:54520884-54523552 (-)
DescriptionSimilar to At2g01390/At2g01380: Pentatricopeptide repeat-containing protein At2g01390
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q9ZU29 Pentatricopeptide repeat-containing protein At2g01390. No verified direct reference in this release
At1g18900 Pentatricopeptide repeat-containing protein At1g18900. No verified direct reference in this release
At1g05670 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial. No verified direct reference in this release
At5g02860 Pentatricopeptide repeat-containing protein At5g02860. No verified direct reference in this release
At2g01360 Pentatricopeptide repeat-containing protein At2g01360. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014661 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G18900
ath:AT2G01360
ath:AT2G01390
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.776
Rank 1 · LXL04_014661 · OH-1004
Plastid0.165
Rank 2 · LXL04_014661 · OH-1004
Nucleus0.056
Rank 3 · LXL04_014661 · OH-1004
Cytoplasm0.040
Rank 4 · LXL04_014661 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_014661 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276.3TPR_24132-235 aa
PF13041.13PPR_2138-185 aa
PF17177.11PPR_long139-285 aa
PF29070.1MSC6_N147-266 aa
PF13812.13PPR_3161-219 aa
PF12854.14PPR_1168-201 aa
PF13041.13PPR_2173-217 aa
PF01535.27PPR175-205 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_014661PF23276.3TPR_241322356.7e-1865.6
LXL04_014661PF13041.13PPR_21381853.9e-54181.3
LXL04_014661PF17177.11PPR_long1392853.2e-1660.1
LXL04_014661PF29070.1MSC6_N1472665.9e-2692.2
LXL04_014661PF13812.13PPR_31612192.6e-37127.4
LXL04_014661PF12854.14PPR_11682014.6e-2794.2
LXL04_014661PF13041.13PPR_21732173.9e-54181.3
LXL04_014661PF01535.27PPR1752052e-44147.5
LXL04_014661PF13041.13PPR_22072553.9e-54181.3
LXL04_014661PF01535.27PPR2102402e-44147.5
LXL04_014661PF29070.1MSC6_N2122965.9e-2692.2
LXL04_014661PF13812.13PPR_32312892.6e-37127.4
LXL04_014661PF29070.1MSC6_N2412985.9e-2692.2
LXL04_014661PF01535.27PPR2462752e-44147.5
LXL04_014661PF13041.13PPR_22492913.9e-54181.3
LXL04_014661PF13812.13PPR_32663092.6e-37127.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZU29Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g0139046.786%Swiss-Protmoderate database homology
Q8GYP6Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1890027.174%Swiss-Protweak database homology
Q0WVK7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g05670, mitochondrial23.821%Swiss-Protweak database homology
Q9LYZ9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0286023.134%Swiss-Protweak database homology
Q9ZU31Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g0136035.329%Swiss-Protweak database homology

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