LXL04_014658 | RubberDandelionOmics

Gene overview

LXL04_014658

Reference: OH-1004 Chr: Chr03 Coordinates: 54443752-54444246 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

495 bp · LXL04_014658|LXL04_014658|OH1004|cDNA

ATGAATTCAGGTGACGATGTTTCAGCTACAAGTTCTTCAGTTTCTTCCTTCGGTAAATTCTTCAATCAATTAGCATCGCCCACTAGGAAACCCCCGATTCCTGGCGGTTCCGATGACATCCATCAGGTGTTTAATTACTTTGACGAGAACAGAGGCGGGAAGATATCTCCCAAGGAGCTGAAGGTAGGTGGGGAGGAGAGTCAGTTATCAGAGATGGTAGTGCGGTTGTCGGATGCAGACGGAGACGGGGTGTTAGGGTT...

CDS

Download CDS FASTA

495 bp · LXL04_014658|LXL04_014658|OH1004|CDS

ATGAATTCAGGTGACGATGTTTCAGCTACAAGTTCTTCAGTTTCTTCCTTCGGTAAATTCTTCAATCAATTAGCATCGCCCACTAGGAAACCCCCGATTCCTGGCGGTTCCGATGACATCCATCAGGTGTTTAATTACTTTGACGAGAACAGAGGCGGGAAGATATCTCCCAAGGAGCTGAAGGTAGGTGGGGAGGAGAGTCAGTTATCAGAGATGGTAGTGCGGTTGTCGGATGCAGACGGAGACGGGGTGTTAGGGTT...

Protein

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164 aa · LXL04_014658|LXL04_014658|OH1004|PROTEIN

MNSGDDVSATSSSVSSFGKFFNQLASPTRKPPIPGGSDDIHQVFNYFDENRGGKISPKELKVGGEESQLSEMVVRLSDADGDGVLGLDDFTKMMKEGEDGELREAVNTFYERENASPSSQMQFIKHLLCIGRKWEAESQCFRQSIQQKIDRRIRHSDMQKRDGE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014658`
TK1151 ID	TkA02G406250
OH-1004 ID	LXL04_014658
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014658

Location Chr03:54443752-54444246 (-)

Description Similar to CML38: Calcium-binding protein CML38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76650`	Potential calcium sensor that binds calcium in vitro.	Developmental and stimulus-induced expression patterns of Arabidopsis calmodulin-like genes CML37, CML38 and CML39.2007 · DOI: 10.1007/s11103-007-9189-0
`At5g42380`	Potential calcium sensor that binds calcium in vitro.	Developmental and stimulus-induced expression patterns of Arabidopsis calmodulin-like genes CML37, CML38 and CML39.2007 · DOI: 10.1007/s11103-007-9189-0
`At1g76640`	Potential calcium sensor that binds calcium in vitro.	Developmental and stimulus-induced expression patterns of Arabidopsis calmodulin-like genes CML37, CML38 and CML39.2007 · DOI: 10.1007/s11103-007-9189-0

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0568600`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014658 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0010193 response to ozone Biological Process

GO:0033198 response to ATP Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1900459 positive regulation of brassinosteroid mediated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G76640

ath:AT1G76650

ath:AT5G42380

dosa:Os07g0568600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.356

Rank 1 · LXL04_014658 · OH-1004

Nucleus0.315

Rank 2 · LXL04_014658 · OH-1004

Cell membrane0.192

Rank 3 · LXL04_014658 · OH-1004

Mitochondrion0.143

Rank 4 · LXL04_014658 · OH-1004

Endoplasmic reticulum0.119

Rank 5 · LXL04_014658 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13499.13EF-hand_738-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014658	`PF13499.13`	EF-hand_7	38	95	3e-08	34.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRE6`	Arabidopsis thaliana	Calcium-binding protein CML38	38.776%	Swiss-Prot	weak database homology
`Q9FIH9`	Arabidopsis thaliana	Calcium-binding protein CML37	40.000%	Swiss-Prot	weak database homology
`Q9SRE7`	Arabidopsis thaliana	Calcium-binding protein CML39	42.857%	Swiss-Prot	weak database homology
`Q84SL0`	Oryza sativa subsp. japonica	Calcium-dependent protein kinase 20	30.851%	Swiss-Prot	moderate database homology

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