LXL04_014418 | RubberDandelionOmics

Gene overview

LXL04_014418

Reference: OH-1004 Chr: Chr03 Coordinates: 48746019-48747389 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1371 bp · LXL04_014418|LXL04_014418|OH1004|cDNA

ATGGCTCCTCCTTCTTCTTATCTCTTATTTCTCACTCTTATCTCCATACTCAATCTCTGTATCCCTTCATCTTCTTCACTCGACACCCTCACACTTTCTCTAACACAACACATTGCACCAGAAACCAACAAACATCCATGGCTGCAGACCATAAACTCCCTCGCGTCATCTTCTATAACCAGAGCGCATCACCTCAAAAACCCCAATTCTTCTTCAACCTCAAAAATCAATCTATTTCCTCAAAGCTATGGCGGATACTC...

CDS

Download CDS FASTA

1371 bp · LXL04_014418|LXL04_014418|OH1004|CDS

ATGGCTCCTCCTTCTTCTTATCTCTTATTTCTCACTCTTATCTCCATACTCAATCTCTGTATCCCTTCATCTTCTTCACTCGACACCCTCACACTTTCTCTAACACAACACATTGCACCAGAAACCAACAAACATCCATGGCTGCAGACCATAAACTCCCTCGCGTCATCTTCTATAACCAGAGCGCATCACCTCAAAAACCCCAATTCTTCTTCAACCTCAAAAATCAATCTATTTCCTCAAAGCTATGGCGGATACTC...

Protein

Download Protein FASTA

456 aa · LXL04_014418|LXL04_014418|OH1004|PROTEIN

MAPPSSYLLFLTLISILNLCIPSSSSLDTLTLSLTQHIAPETNKHPWLQTINSLASSSITRAHHLKNPNSSSTSKINLFPQSYGGYSVSLSFGSPPQKLSFVMDTGSSLVWFPCTHRYTCSDCSFPNVNQTNIPKFIPKLSSSAKIIGCKNKKCGWVFGSTDPIQCNGNQICPAYMLQYGSGSTSGLLLSETLDFNEGDATDFLVGCSILSTRQPSGIAGFGRGSASLPVQMGLKKFSYCLVSHKYDDAPVSSDLILVRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014418`
TK1151 ID	TkA02G427340
OH-1004 ID	LXL04_014418
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014418

Location Chr03:48746019-48747389 (+)

Description Similar to nep2: Aspartic proteinase nepenthesin-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16563`	Probable aspartyl protease At4g16563.	No verified direct reference in this release
`At1g01300`	Aspartyl protease.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0186900`	Anther-specific aspartic protease involved in tapetal programmed cell death (PCD).	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.2013 · DOI: 10.1038/ncomms2396

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014418 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0043067 regulation of programmed cell death Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01300

ath:AT4G16563

dosa:Os03g0186900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.503

Rank 1 · LXL04_014418 · OH-1004

Cell membrane0.205

Rank 2 · LXL04_014418 · OH-1004

Endoplasmic reticulum0.125

Rank 3 · LXL04_014418 · OH-1004

Cytoplasm0.078

Rank 4 · LXL04_014418 · OH-1004

Lysosome / Vacuole0.052

Rank 5 · LXL04_014418 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543.12TAXi_N86-244 aa

PF00026.29Asp86-451 aa

PF14541.12TAXi_C291-452 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014418	`PF14543.12`	TAXi_N	86	244	8.9e-27	95.1
LXL04_014418	`PF00026.29`	Asp	86	451	8.9e-22	78.6
LXL04_014418	`PF14541.12`	TAXi_C	291	452	5.4e-37	127.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q940R4`	Arabidopsis thaliana	Probable aspartyl protease At4g16563	30.479%	Swiss-Prot	moderate database homology
`Q9LNJ3`	Arabidopsis thaliana	Aspartyl protease family protein 2	29.605%	Swiss-Prot	weak database homology
`Q6F4N5`	Oryza sativa subsp. japonica	Aspartyl protease 25	27.991%	Swiss-Prot	weak database homology

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