LXL04_014380 | RubberDandelionOmics

Gene overview

LXL04_014380

Reference: OH-1004 Chr: Chr03 Coordinates: 47849983-47852471 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1224 bp · LXL04_014380|LXL04_014380|OH1004|cDNA

ATGGAAAGCTTAATCCCCACATGGCAAGTTTCGTTTCTGGGTGCGGTTTTGGCATGGATGGTACTGTCTTCGATGTTCAACGTGACCAGGATAATTAGATCTTTAACCCAACCATGGGTGTCGAGCTGTGTAATCTCCGGTATCCCCATCATTCTTCAGATCCAGAAATACCAGCATACGTATTTGGATGCGTTATTTACTGGGTTATCTTGTCTTGTTTCCGTCCCTTTCTACACCGGTTTTCTTCCCTTGCTATTCTG...

CDS

Download CDS FASTA

1224 bp · LXL04_014380|LXL04_014380|OH1004|CDS

ATGGAAAGCTTAATCCCCACATGGCAAGTTTCGTTTCTGGGTGCGGTTTTGGCATGGATGGTACTGTCTTCGATGTTCAACGTGACCAGGATAATTAGATCTTTAACCCAACCATGGGTGTCGAGCTGTGTAATCTCCGGTATCCCCATCATTCTTCAGATCCAGAAATACCAGCATACGTATTTGGATGCGTTATTTACTGGGTTATCTTGTCTTGTTTCCGTCCCTTTCTACACCGGTTTTCTTCCCTTGCTATTCTG...

Protein

Download Protein FASTA

407 aa · LXL04_014380|LXL04_014380|OH1004|PROTEIN

MESLIPTWQVSFLGAVLAWMVLSSMFNVTRIIRSLTQPWVSSCVISGIPIILQIQKYQHTYLDALFTGLSCLVSVPFYTGFLPLLFWSGHGKLARNMTLLMALCDYAGNCVKDVVSAPRPKSVRILTVTADEKDFAMEYGLPSSHTLNTVCLSGYLLHYILAYNGNSDASYELVGIAFVCVFVGLIGFGRVYLGMHSVIDIIGGLFLGLTILKFWLCVHEQVDNFVVSGQNVTSFWVAISFLSLFAYPTPELPTPSFEYH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014380`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014380

Location Chr03:47849983-47852471 (-)

Description Similar to LPPD: Lipid phosphate phosphatase delta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58490`	Functions as a sphingoid long-chain base phosphate (LCBP) phosphatase.	Degradation of long-chain base 1-phosphate (LCBP) in Arabidopsis: functional characterization of LCBP phosphatase involved in the dehydration stress response.2012 · DOI: 10.1007/s10265-011-0451-9

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014380 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006665 sphingolipid metabolic process Biological Process

GO:0006670 sphingosine metabolic process Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0030148 sphingolipid biosynthetic process Biological Process

GO:0046839 phospholipid dephosphorylation Biological Process

GO:0061469 regulation of type B pancreatic cell proliferation Biological Process

GO:0090332 stomatal closure Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0008117 sphinganine-1-phosphate aldolase activity Molecular Function

KEGG gene cross-reference

ath:AT3G58490

ddi:DDB_G0272260

mmu:433323

sce:YJL134W

spo:2543496

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.766

Rank 1 · LXL04_014380 · OH-1004

Nucleus0.137

Rank 2 · LXL04_014380 · OH-1004

Cytoplasm0.080

Rank 3 · LXL04_014380 · OH-1004

Golgi apparatus0.071

Rank 4 · LXL04_014380 · OH-1004

Mitochondrion0.067

Rank 5 · LXL04_014380 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01569.28PAP297-219 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014380	`PF01569.28`	PAP2	97	219	1.1e-16	61.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2G7`	Arabidopsis thaliana	Lipid phosphate phosphatase delta	63.524%	Swiss-Prot	strong database homology

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