LXL04_014333 | RubberDandelionOmics

Gene overview

LXL04_014333

Reference: OH-1004 Chr: Chr03 Coordinates: 46405700-46408550 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

768 bp · LXL04_014333|LXL04_014333|OH1004|cDNA

ATGCTACTTCAGCCTTTAAAACAGAAACCTAGAGACTCTCAAAAACCACAACATCAACGCGTATCAGAATTGCAAAGGCTTCGTTCCATATTTGGAACGAGTGAAAGACAGTGGGTTGAAGCCCAAGTTGAGAATGCAAAGCAGCAAGCTATTCTATTGGCACTTAAAGGTCAAAGAAAGCATGTGGAATTGGTTGGAGAGCTTTCAAGTCTACATAGAAAAGAAGACAAGTTATTATCCGAGGTCATAAGCAATTTTCC...

CDS

Download CDS FASTA

768 bp · LXL04_014333|LXL04_014333|OH1004|CDS

ATGCTACTTCAGCCTTTAAAACAGAAACCTAGAGACTCTCAAAAACCACAACATCAACGCGTATCAGAATTGCAAAGGCTTCGTTCCATATTTGGAACGAGTGAAAGACAGTGGGTTGAAGCCCAAGTTGAGAATGCAAAGCAGCAAGCTATTCTATTGGCACTTAAAGGTCAAAGAAAGCATGTGGAATTGGTTGGAGAGCTTTCAAGTCTACATAGAAAAGAAGACAAGTTATTATCCGAGGTCATAAGCAATTTTCC...

Protein

Download Protein FASTA

255 aa · LXL04_014333|LXL04_014333|OH1004|PROTEIN

MLLQPLKQKPRDSQKPQHQRVSELQRLRSIFGTSERQWVEAQVENAKQQAILLALKGQRKHVELVGELSSLHRKEDKLLSEVISNFPSILAISNISTICTQENTIKNDCHFRNYKGAVVTNLQSLDKLRDFEIGMVRLFFLPCVSTSKRNPTTPGAAHLDFPTSAGKQRCFLMLAGQEETERKREKRVLCAWGVRPPGRRRTSSLPLSVVTAGVPPSQVASVYLLTTTAHHHYVTPTVAVGKELAGKIQGCRRLI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014333`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014333

Location Chr03:46405700-46408550 (+)

Description Similar to AUG3: AUGMIN subunit 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48520`	Involved in microtubules reorganization during spindle and phragmoplast development.	Augmin plays a critical role in organizing the spindle and phragmoplast microtubule arrays in Arabidopsis.2011 · DOI: 10.1105/tpc.111.086892

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014333 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0031023 microtubule organizing center organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0080175 phragmoplast microtubule organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005815 microtubule organizing center Cellular Component

GO:0005819 spindle Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0070652 HAUS complex Cellular Component

GO:0072686 mitotic spindle Cellular Component

KEGG gene cross-reference

ath:AT5G48520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.429

Rank 1 · LXL04_014333 · OH-1004

Nucleus0.402

Rank 2 · LXL04_014333 · OH-1004

Mitochondrion0.140

Rank 3 · LXL04_014333 · OH-1004

Cell membrane0.112

Rank 4 · LXL04_014333 · OH-1004

Endoplasmic reticulum0.066

Rank 5 · LXL04_014333 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WQE7`	Arabidopsis thaliana	AUGMIN subunit 3	64.045%	Swiss-Prot	weak database homology

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