LXL04_014195 | RubberDandelionOmics

Gene overview

LXL04_014195

Reference: OH-1004 Chr: Chr03 Coordinates: 43414716-43416864 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1023 bp · LXL04_014195|LXL04_014195|OH1004|cDNA

ttgTTTACAGCAGCAGCGCCATCTCGTTCCTTCTTGCAAGTGGCAGCCACTGAAGAGGCAGTTGCTCCGCCTTTAAGAGTTGTCCAGATCGAAGGACTGGTTATATTGAAGATCATCAAACACTGCACAGAGTTTTCACCTGCTCTTGTGACTGGTCAACTTCTCGGCTTAGATGTTGGCAGTGTTCTTGAAGTAACCAACTGCTTCCCATTTCCGATCAGGGAGGAAGATGAGGAGATTGAGGCAGAAGGTGCTAACTA...

CDS

Download CDS FASTA

1023 bp · LXL04_014195|LXL04_014195|OH1004|CDS

TTGTTTACAGCAGCAGCGCCATCTCGTTCCTTCTTGCAAGTGGCAGCCACTGAAGAGGCAGTTGCTCCGCCTTTAAGAGTTGTCCAGATCGAAGGACTGGTTATATTGAAGATCATCAAACACTGCACAGAGTTTTCACCTGCTCTTGTGACTGGTCAACTTCTCGGCTTAGATGTTGGCAGTGTTCTTGAAGTAACCAACTGCTTCCCATTTCCGATCAGGGAGGAAGATGAGGAGATTGAGGCAGAAGGTGCTAACTA...

Protein

Download Protein FASTA

340 aa · LXL04_014195|LXL04_014195|OH1004|PROTEIN

MFTAAAPSRSFLQVAATEEAVAPPLRVVQIEGLVILKIIKHCTEFSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEAEGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSKSNQGVLALKALKLSDSFMELYRSNEFNGEKLREKNLSWVDIFEEIPIKVSNSALVSAFMTELEADSPVTQSDYDRLQLSTNPFMERNMEFLIECMDDLSMEQQKFQFYYRNLSRQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014195`
TK1151 ID	TkA02G448470
OH-1004 ID	LXL04_014195
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014195

Location Chr03:43414716-43416864 (+)

Description Similar to TIF3H1: Eukaryotic translation initiation factor 3 subunit H

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10840`	Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014195 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001732 formation of cytoplasmic translation initiation complex Biological Process

GO:0006413 translational initiation Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0034286 response to maltose Biological Process

GO:0045948 positive regulation of translational initiation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005840 ribosome Cellular Component

KEGG gene cross-reference

ath:AT1G10840

ddi:DDB_G0281153

nve:5511049

xla:496043

xtr:394989

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.543

Rank 1 · LXL04_014195 · OH-1004

Nucleus0.450

Rank 2 · LXL04_014195 · OH-1004

Lysosome / Vacuole0.064

Rank 3 · LXL04_014195 · OH-1004

Golgi apparatus0.062

Rank 4 · LXL04_014195 · OH-1004

Cell membrane0.049

Rank 5 · LXL04_014195 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01398.27JAB26-130 aa

PF19445.5eIF3h_C146-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014195	`PF01398.27`	JAB	26	130	5.5e-17	62.4
LXL04_014195	`PF19445.5`	eIF3h_C	146	339	6.9e-57	193.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5Z2`	Arabidopsis thaliana	Eukaryotic translation initiation factor 3 subunit H	84.821%	Swiss-Prot	strong database homology

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