LXL04_014179 | RubberDandelionOmics

Gene overview

LXL04_014179

Reference: OH-1004 Chr: Chr03 Coordinates: 43243127-43250467 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3570 bp · LXL04_014179|LXL04_014179|OH1004|cDNA

TTCGGTTGGATTTTCCGTAATCATTTATAACACCAATTTGGGGTTTACACCATCATACTTATCTCACTGCCCACTTCCGCCACTACCCAAACTGTATTATCAAGGATGATGGCTTCTTCTGCTACAATGGCCGCGAGTAATAAGTTAATTAATGTGAATGCAAGTAACGGTGATTATAAGGTATGGGAAGATCCATCCTTCATTAAGTGGAGGAAGAGGGATTCTCATGTTTCGCTCCATTGCCATGATTCCGTGGAAGG...

CDS

Download CDS FASTA

3504 bp · LXL04_014179|LXL04_014179|OH1004|CDS

CTGCCCACTTCCGCCACTACCCAAACTGTATTATCAAGGATGATGGCTTCTTCTGCTACAATGGCCGCGAGTAATAAGTTAATTAATGTGAATGCAAGTAACGGTGATTATAAGGTATGGGAAGATCCATCCTTCATTAAGTGGAGGAAGAGGGATTCTCATGTTTCGCTCCATTGCCATGATTCCGTGGAAGGTTCTTTGAAATACTGGTATGAACGAAACAAAGTGGATGTTCTTGTATCAAAATCAGCAATTTGGGA...

Protein

Download Protein FASTA

1167 aa · LXL04_014179|LXL04_014179|OH1004|PROTEIN

MPTSATTQTVLSRMMASSATMAASNKLINVNASNGDYKVWEDPSFIKWRKRDSHVSLHCHDSVEGSLKYWYERNKVDVLVSKSAIWDDDAVSGSIECAKCWVQDLPFVKSLSGYWKFFLAQSPATTPPNFHDTVFQDSTWESIPVPSNWQMHGFDRPIYTNIIYPFPLDPPHVPDDNPTGCYRTYFHLPKEWEGRRILLHFEAVDSAFHVWINGAPVGYSQDSRLPAEFEITEFCHECGSDKKNVVAVQVYRWSDGSYLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014179`
TK1151 ID	TkA02G448800
OH-1004 ID	LXL04_014179
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 98.545 / OH-1004 92.888 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_014179`
Location	Chr03:43243127-43250467 (+)
Description	Similar to lacZ: Beta-galactosidase (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014179` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0005990 lactose catabolic process Biological Process GO:0009341 beta-galactosidase complex Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0004565 beta-galactosidase activity Molecular Function GO:0030246 carbohydrate binding Molecular Function
KEGG gene cross-reference	ppr:PBPRB0034 vco:VC0395_A1917 vcr:VC395_2453 vvu:VV2_1327 vvy:VVA0165 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.496

Rank 1 · LXL04_014179 · OH-1004

Plastid0.207

Rank 2 · LXL04_014179 · OH-1004

Nucleus0.187

Rank 3 · LXL04_014179 · OH-1004

Peroxisome0.104

Rank 4 · LXL04_014179 · OH-1004

Mitochondrion0.101

Rank 5 · LXL04_014179 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02837.25Glyco_hydro_2_N108-280 aa

PF22666.3Glyco_hydro_2_N2182-251 aa

PF00703.28Glyco_hydro_2282-399 aa

PF02836.24Glyco_hydro_2_C405-687 aa

PF16353.12LacZ_4694-787 aa

PF02929.24Bgal_small_N820-1092 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014179	`PF02837.25`	Glyco_hydro_2_N	108	280	4e-55	187.1
LXL04_014179	`PF22666.3`	Glyco_hydro_2_N2	182	251	8.2e-06	26.7
LXL04_014179	`PF00703.28`	Glyco_hydro_2	282	399	9.3e-18	65.7
LXL04_014179	`PF02836.24`	Glyco_hydro_2_C	405	687	2e-98	330.0
LXL04_014179	`PF16353.12`	LacZ_4	694	787	4e-17	63.0
LXL04_014179	`PF02929.24`	Bgal_small_N	820	1092	2e-75	254.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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