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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_014154
Reference: OH-1004 Chr: Chr03 Coordinates: 42930168-42957503 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

11601 bp · LXL04_014154|LXL04_014154|OH1004|cDNA

ATGGCGGTTCATTCCCTCTCACCGATGCATTTGCTACCATCTCATCCGAAATTGAGCTACTCCGTTACCAACAATTCCTGCTCCTCGATTCGTTTCCTACAGAAAACAATCACAACCGGGCACATTCGTAATCATTCCGTTACAGCTACTATGTCGGTTGACGCTTACGCAGTCGGAGAGGACTTGCCGGTGGATTACGCGGATTGGCTTCGGAAAGTTGATCCTGGTGATAGGAGAAGAGCCGGAGTGCTTCTCCATCC...

CDS

Download CDS FASTA

11601 bp · LXL04_014154|LXL04_014154|OH1004|CDS

ATGGCGGTTCATTCCCTCTCACCGATGCATTTGCTACCATCTCATCCGAAATTGAGCTACTCCGTTACCAACAATTCCTGCTCCTCGATTCGTTTCCTACAGAAAACAATCACAACCGGGCACATTCGTAATCATTCCGTTACAGCTACTATGTCGGTTGACGCTTACGCAGTCGGAGAGGACTTGCCGGTGGATTACGCGGATTGGCTTCGGAAAGTTGATCCTGGTGATAGGAGAAGAGCCGGAGTGCTTCTCCATCC...

Protein

Download Protein FASTA

3866 aa · LXL04_014154|LXL04_014154|OH1004|PROTEIN

MAVHSLSPMHLLPSHPKLSYSVTNNSCSSIRFLQKTITTGHIRNHSVTATMSVDAYAVGEDLPVDYADWLRKVDPGDRRRAGVLLHPTSFPGPYGIGDLGDQAFQFIDWLHEAGCSLWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLDKLVEDGLLLKEELPEPLDTDRVNYDTVAHIKDPLIAKAAKRLISSKGDLKNQLEDFCKDPDVASWLEDAAYFAAIDDIYNSSYNWYDWPEPLKNRHLSALEDIYHSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_014154
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_014154
LocationChr03:42930168-42957503 (-)
DescriptionSimilar to DPEP: 4-alpha-glucanotransferase, chloroplastic/amyloplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64860 Chloroplastic alpha-glucanotransferase involved in maltotriose metabolism.
A critical role for disproportionating enzyme in starch breakdown is revealed by a knock-out mutation in Arabidopsis.2001 · DOI: 10.1046/j.1365-313x.2001.01012.x
Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation.2009 · DOI: 10.1093/mp/ssp093

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0627000 Chloroplastic alpha-glucanotransferase involved in maltotriose metabolism. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014154 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000025 maltose catabolic process Biological Process
GO:0000272 polysaccharide catabolic process Biological Process
GO:0005983 starch catabolic process Biological Process
GO:0006006 glucose metabolic process Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0075523 viral translational frameshifting Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009501 amyloplast Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G64860
dosa:Os07g0627000
sce:YIL082W-A
sot:102595076
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.526
Rank 1 · LXL04_014154 · OH-1004
Nucleus0.338
Rank 2 · LXL04_014154 · OH-1004
Mitochondrion0.129
Rank 3 · LXL04_014154 · OH-1004
Plastid0.070
Rank 4 · LXL04_014154 · OH-1004
Peroxisome0.054
Rank 5 · LXL04_014154 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02446.24Glyco_hydro_7785-553 aa
PF19259.5Ty3_capsid823-973 aa
PF03732.25PEG10_N-capsid824-896 aa
PF08284.17RVP_21083-1182 aa
PF30863.1PRO_PEG10-RTL11102-1182 aa
PF00078.33RVT_11287-1447 aa
PF17919.8RT_RNaseH_21509-1603 aa
PF17917.8RT_RNaseH1534-1633 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_014154PF02446.24Glyco_hydro_77855531.2e-150503.1
LXL04_014154PF19259.5Ty3_capsid8239731e-1971.5
LXL04_014154PF03732.25PEG10_N-capsid8248966.5e-2794.4
LXL04_014154PF08284.17RVP_2108311828e-45152.7
LXL04_014154PF30863.1PRO_PEG10-RTL1110211823e-1970.2
LXL04_014154PF00078.33RVT_1128714478e-79264.9
LXL04_014154PF17919.8RT_RNaseH_2150916033.3e-60201.1
LXL04_014154PF17917.8RT_RNaseH153416339.3e-61203.2
LXL04_014154PF17921.8Integrase_H2C2178018306.5e-34116.6
LXL04_014154PF09337.17zf-H2C2178918278.5e-1349.1
LXL04_014154PF00665.33rve185419456.2e-1865.7
LXL04_014154PF31073.1DUF8803201620818.3e-1761.5
LXL04_014154PF24626.2SH3_Tf2-1201920832.6e-49165.9
LXL04_014154PF22938.3Integrase_p58_C204820814.9e-0730.4
LXL04_014154PF19259.5Ty3_capsid244826231e-1971.5
LXL04_014154PF03732.25PEG10_N-capsid245825366.5e-2794.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LV91Arabidopsis thaliana4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic71.698%Swiss-Protweak database homology
Q8LI30Oryza sativa subsp. japonica4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic68.906%Swiss-Protweak database homology

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