LXL04_014093 | RubberDandelionOmics

Gene overview

LXL04_014093

Reference: OH-1004 Chr: Chr03 Coordinates: 42004570-42007694 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1281 bp · LXL04_014093|LXL04_014093|OH1004|cDNA

ATGTCTTCCATGGTGAAGCTTCCTTCTTCGAGTGATAACAATAATAGTTATGATGACGGTCATGAACAGCTAGATTTTCAACATCCGACGAATTTGACGACGGTCGCCGCCGCCAACCTTTGCCTTTCACCGGACATGTTTCTCGGAGCTGCTGCTGCTCTCAAAGAGCTGGTAGTGGAGACGACGTGGACAGAAGCGTGCGCCGGAGGTGATGAAATCATGGACCCGACGGTTTACACTGGTCTGTTGGGGACGGCGTT...

CDS

Download CDS FASTA

1281 bp · LXL04_014093|LXL04_014093|OH1004|CDS

ATGTCTTCCATGGTGAAGCTTCCTTCTTCGAGTGATAACAATAATAGTTATGATGACGGTCATGAACAGCTAGATTTTCAACATCCGACGAATTTGACGACGGTCGCCGCCGCCAACCTTTGCCTTTCACCGGACATGTTTCTCGGAGCTGCTGCTGCTCTCAAAGAGCTGGTAGTGGAGACGACGTGGACAGAAGCGTGCGCCGGAGGTGATGAAATCATGGACCCGACGGTTTACACTGGTCTGTTGGGGACGGCGTT...

Protein

Download Protein FASTA

426 aa · LXL04_014093|LXL04_014093|OH1004|PROTEIN

MSSMVKLPSSSDNNNSYDDGHEQLDFQHPTNLTTVAAANLCLSPDMFLGAAAALKELVVETTWTEACAGGDEIMDPTVYTGLLGTALTCLRYYEATGSREDLQLSANIVRACAAAVANTSTRYTTFLCGRGGIYALGAVIANHCGDLHNRNFYLAEFLELAQEKALPVGPKEGGFGMSYDLLHGRAGFLYAALFINKHIGQDTVPSDLLTPIIEAVIDGGRTGASDHPLCPLMYRWHGTRYLGAAHGLAGILHVLLHFPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014093`
TK1151 ID	TkA02G456390
OH-1004 ID	LXL04_014093
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	73.900
Protein coverage (%)	TK1151 70.400 / OH-1004 20.657 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014093

Location Chr03:42004570-42007694 (+)

Description Similar to GCL1: LanC-like protein GCL1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65280`	May play a role in signaling.	Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03291.x The GCR2 gene family is not required for ABA control of seed germination and early seedling development in Arabidopsis.2008 · DOI: 10.1371/journal.pone.0002982
`At1g52920`	May play a role in abscisic acid (ABA) signaling.	Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03291.x The GCR2 gene family is not required for ABA control of seed germination and early seedling development in Arabidopsis.2008 · DOI: 10.1371/journal.pone.0002982
`At2g20770`	May play a role in signaling.	The GCR2 gene family is not required for ABA control of seed germination and early seedling development in Arabidopsis.2008 · DOI: 10.1371/journal.pone.0002982

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014093 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010231 maintenance of seed dormancy Biological Process

GO:0031179 peptide modification Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G52920

ath:AT2G20770

ath:AT5G65280

hsa:55915

mmu:71835

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.474

Rank 1 · LXL04_014093 · OH-1004

Nucleus0.243

Rank 2 · LXL04_014093 · OH-1004

Mitochondrion0.112

Rank 3 · LXL04_014093 · OH-1004

Peroxisome0.097

Rank 4 · LXL04_014093 · OH-1004

Endoplasmic reticulum0.092

Rank 5 · LXL04_014093 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05147.20LANC_like73-425 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014093	`PF05147.20`	LANC_like	73	425	1.7e-88	297.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJN7`	Arabidopsis thaliana	LanC-like protein GCL1	61.347%	Swiss-Prot	strong database homology
`F4IEM5`	Arabidopsis thaliana	LanC-like protein GCR2	46.032%	Swiss-Prot	moderate database homology
`Q8VZQ6`	Arabidopsis thaliana	LanC-like protein GCL2	46.316%	Swiss-Prot	moderate database homology

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