RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_014072
Reference: OH-1004 Chr: Chr03 Coordinates: 41659492-41662791 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2118 bp · LXL04_014072|LXL04_014072|OH1004|cDNA

ATGGAATTTGGGTTCTTTAGGGGATTGCCTACTCACCTTTATTTCTTAGACATATTTAGTCAGGTGGCGTTCTTCATCAATGTTTTCCTCCAATTTTTTGTTGCTTACAGAGATAGTTTAACCTACAGAATGGTCCATAATCGAGCCCTCATTGTTATTAGGTACTTGAAATCTCATTTCATATTTGATTTACTTGCATGTATGCCATGGGATAATATATATAGGGCATCTGGAAGAAAAGAAGAAGTGAGGTTCCTTAT...

CDS

Download CDS FASTA

2118 bp · LXL04_014072|LXL04_014072|OH1004|CDS

ATGGAATTTGGGTTCTTTAGGGGATTGCCTACTCACCTTTATTTCTTAGACATATTTAGTCAGGTGGCGTTCTTCATCAATGTTTTCCTCCAATTTTTTGTTGCTTACAGAGATAGTTTAACCTACAGAATGGTCCATAATCGAGCCCTCATTGTTATTAGGTACTTGAAATCTCATTTCATATTTGATTTACTTGCATGTATGCCATGGGATAATATATATAGGGCATCTGGAAGAAAAGAAGAAGTGAGGTTCCTTAT...

Protein

Download Protein FASTA

705 aa · LXL04_014072|LXL04_014072|OH1004|PROTEIN

MEFGFFRGLPTHLYFLDIFSQVAFFINVFLQFFVAYRDSLTYRMVHNRALIVIRYLKSHFIFDLLACMPWDNIYRASGRKEEVRFLILIRLIRARKVLEFFSKLEKDIRVNYLFSRILKLIVIKLYCTHTAACIFYYLATTLPASKEEYTWIGSLKLGDYRYSNFREIDLWKRYITSLYFAIGFGDIHAVNLREMIFVMGYVSFNTVLGAYLIGNITALIVKGSKTERYRDRMKDLLKYIDRNRLGRDISNAIKNHLRLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_014072
TK1151 IDTkA02G456810
OH-1004 IDLXL04_014072
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 88.587 / OH-1004 92.482
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_014072
LocationChr03:41659492-41662791 (+)
DescriptionSimilar to SKOR: Potassium channel SKOR
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02850 Highly selective outward-rectifying potassium channel.
Identification and disruption of a plant shaker-like outward channel involved in K+ release into the xylem sap.1998 · DOI: 10.1016/s0092-8674(00)81606-2
At5g37500 Major selective outward-rectifying potassium channel of the guard cell membrane.
The Arabidopsis outward K+ channel GORK is involved in regulation of stomatal movements and plant transpiration.2003 · DOI: 10.1073/pnas.0733970100
At2g26650 May act as a highly selective inward-rectifying potassium channel mediating root potassium uptake under low K⁺ conditions.
Regulated expression of Arabidopsis shaker K+ channel genes involved in K+ uptake and distribution in the plant.2003 · DOI: 10.1023/a:1022597102282
A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.2006 · DOI: 10.1016/j.cell.2006.06.011
A Ca(2)+ signaling pathway regulates a K(+) channel for low-K response in Arabidopsis.2006 · DOI: 10.1073/pnas.0605129103
A protein phosphorylation/dephosphorylation network regulates a plant potassium channel.2007 · DOI: 10.1073/pnas.0707912104
High-affinity K(+) transport in Arabidopsis: AtHAK5 and AKT1 are vital for seedling establishment and postgermination growth under low-potassium conditions.2010 · DOI: 10.1104/pp.110.154369
A role for the AKT1 potassium channel in plant nutrition.1998 · DOI: 10.1126/science.280.5365.918

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0250600 Probable outward-rectifying potassium channel. No verified direct reference in this release
Os04g0445000 Probable outward-rectifying potassium channel. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014072 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006811 monoatomic ion transport Biological Process
GO:0006813 potassium ion transport Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0010118 stomatal movement Biological Process
GO:0051592 response to calcium ion Biological Process
GO:0055075 potassium ion homeostasis Biological Process
GO:1902458 positive regulation of stomatal opening Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G02850
ath:AT5G37500
dosa:Os04g0445000
dosa:Os06g0250600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.620
Rank 1 · LXL04_014072 · OH-1004
Cytoplasm0.180
Rank 2 · LXL04_014072 · OH-1004
Endoplasmic reticulum0.147
Rank 3 · LXL04_014072 · OH-1004
Lysosome / Vacuole0.103
Rank 4 · LXL04_014072 · OH-1004
Golgi apparatus0.080
Rank 5 · LXL04_014072 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00520.38Ion_trans11-225 aa
PF00027.36cNMP_binding317-400 aa
PF12796.14Ank_2449-536 aa
PF13637.13Ank_4450-494 aa
PF13857.13Ank_5464-511 aa
PF00023.37Ank473-505 aa
PF00023.37Ank506-537 aa
PF12796.14Ank_2543-623 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_014072PF00520.38Ion_trans112256.9e-1762.1
LXL04_014072PF00027.36cNMP_binding3174006.7e-1865.1
LXL04_014072PF12796.14Ank_24495362.1e-29102.6
LXL04_014072PF13637.13Ank_44504948.6e-2690.1
LXL04_014072PF13857.13Ank_54645116e-2175.0
LXL04_014072PF00023.37Ank4735056.3e-2999.1
LXL04_014072PF00023.37Ank5065376.3e-2999.1
LXL04_014072PF12796.14Ank_25436232.1e-29102.6
LXL04_014072PF13637.13Ank_45475918.6e-2690.1
LXL04_014072PF13857.13Ank_55586116e-2175.0
LXL04_014072PF00023.37Ank5726016.3e-2999.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M8S6Arabidopsis thalianaPotassium channel SKOR66.878%Swiss-Protstrong database homology
Q94A76Arabidopsis thalianaPotassium channel GORK63.497%Swiss-Protstrong database homology
Q38998Arabidopsis thalianaPotassium channel AKT133.641%Swiss-Protmoderate database homology
Q653P0Oryza sativa subsp. japonicaPotassium channel KOR161.252%Swiss-Protstrong database homology
Q7XUW4Oryza sativa subsp. japonicaPotassium channel KOR255.112%Swiss-Protstrong database homology

JBrowse

View in Genome Browser