LXL04_014013 | RubberDandelionOmics

Gene overview

LXL04_014013

Reference: OH-1004 Chr: Chr03 Coordinates: 40550759-40552195 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

822 bp · LXL04_014013|LXL04_014013|OH1004|cDNA

ATGGAAAAAGGTAAATGTGGAAGGGTCTGCAACAAAGGGGCCCATCTGATTTGTCATCTAGATGCCCGATTTGGATCGGGGTCAAGATTTAACGGAAAATTTGTCATAGTGAAAACTGCGTCTTCTCAAATTTATCCAGATCAAGATTCACGACCTACCACGCCAGTTGATCAGTCAACACCCACTTTGACTTTATGTCCAGTCCCATTACCTCCTGGAATCATCTTAACCGAGCTCAAAGAAGCCAAATCGAATCTATA...

CDS

Download CDS FASTA

822 bp · LXL04_014013|LXL04_014013|OH1004|CDS

ATGGAAAAAGGTAAATGTGGAAGGGTCTGCAACAAAGGGGCCCATCTGATTTGTCATCTAGATGCCCGATTTGGATCGGGGTCAAGATTTAACGGAAAATTTGTCATAGTGAAAACTGCGTCTTCTCAAATTTATCCAGATCAAGATTCACGACCTACCACGCCAGTTGATCAGTCAACACCCACTTTGACTTTATGTCCAGTCCCATTACCTCCTGGAATCATCTTAACCGAGCTCAAAGAAGCCAAATCGAATCTATA...

Protein

Download Protein FASTA

273 aa · LXL04_014013|LXL04_014013|OH1004|PROTEIN

MEKGKCGRVCNKGAHLICHLDARFGSGSRFNGKFVIVKTASSQIYPDQDSRPTTPVDQSTPTLTLCPVPLPPGIILTELKEAKSNLYKTTKDLTMIRASVESLNKKLRTHKSNFAEKDGETKWVIEESVDITNGFCKLTFEGQQFRRMEEAAQYEVIKATSEIENTKLSIKMVDMRLIAAKKMEEAARAMEAVARAENEDKPLIRDGKTLSYEEYSVLAQKAQKTQKAEEIFKKNDGNEFPYRQKTLEEALGNTRKNDLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014013`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014013

Location Chr03:40550759-40552195 (+)

Description Similar to At3g51720: WEB family protein At3g51720

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51720`	WEB family protein At3g51720.	No verified direct reference in this release
`At2g40480`	WEB family protein At2g40480.	No verified direct reference in this release
`At2g38370`	WEB family protein At2g38370.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014013 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009903 chloroplast avoidance movement Biological Process

GO:0009904 chloroplast accumulation movement Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G38370

ath:AT2G40480

ath:AT3G51720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.458

Rank 1 · LXL04_014013 · OH-1004

Nucleus0.355

Rank 2 · LXL04_014013 · OH-1004

Cell membrane0.209

Rank 3 · LXL04_014013 · OH-1004

Plastid0.081

Rank 4 · LXL04_014013 · OH-1004

Endoplasmic reticulum0.067

Rank 5 · LXL04_014013 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05701.17WEMBL77-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014013	`PF05701.17`	WEMBL	77	227	6.5e-07	29.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCT6`	Arabidopsis thaliana	WEB family protein At3g51720	42.202%	Swiss-Prot	weak database homology
`Q5XVC7`	Arabidopsis thaliana	WEB family protein At2g40480	35.484%	Swiss-Prot	weak database homology
`F4ISY0`	Arabidopsis thaliana	WEB family protein At2g38370	31.606%	Swiss-Prot	moderate database homology

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