LXL04_014010 | RubberDandelionOmics

Gene overview

LXL04_014010

Reference: OH-1004 Chr: Chr03 Coordinates: 40471280-40472587 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

746 bp · LXL04_014010|LXL04_014010|OH1004|cDNA

ATGGTGTCGGTAAAGGCAATAGATGTGGTGAAGAATGAGCTACCAGTGGATGAGGAGTCGGTCGTGTTATCCGGTGACGTCCGCACCGGTCTAGTCCTCGTCGATATCGTTAACGGCTTCTGTACCGTTGGTGCTGGTAATCTGGCTCCAAGAGCGCCCGATAAGCAAATATCTAGAATGGTTGATGAATCGACAAAACTTGCTAGATTGTTTTGTGAAAAGGAATGGCCGGTGTTTGCTTTCCTTGATTCTCATCATCC...

CDS

Download CDS FASTA

738 bp · LXL04_014010|LXL04_014010|OH1004|CDS

ATGGTGTCGGTAAAGGCAATAGATGTGGTGAAGAATGAGCTACCAGTGGATGAGGAGTCGGTCGTGTTATCCGGTGACGTCCGCACCGGTCTAGTCCTCGTCGATATCGTTAACGGCTTCTGTACCGTTGGTGCTGGTAATCTGGCTCCAAGAGCGCCCGATAAGCAAATATCTAGAATGGTTGATGAATCGACAAAACTTGCTAGATTGTTTTGTGAAAAGGAATGGCCGGTGTTTGCTTTCCTTGATTCTCATCATCC...

Protein

Download Protein FASTA

245 aa · LXL04_014010|LXL04_014010|OH1004|PROTEIN

MVSVKAIDVVKNELPVDEESVVLSGDVRTGLVLVDIVNGFCTVGAGNLAPRAPDKQISRMVDESTKLARLFCEKEWPVFAFLDSHHPDTPEPPYPPHCITGTDESNLVPALQWLENESNVTLRRKDCIDGFLGSVEKDGSNVFVDWVKKHKIEVLLVVGICTDVCVLDFTCSALSARNRGFLTPLKDVIVYSRACATFDLPLNVAKNIPGALAHPQELMHHVGLYMAKSRGAKVVSEVSFASSKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014010`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014010

Location Chr03:40471280-40472587 (-)

Description Similar to NIC1: Nicotinamidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22570`	May catalyze nicotinamide deamidation in the NAD⁺ salvage pathway.	Nicotinamidase participates in the salvage pathway of NAD biosynthesis in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.03013.x

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014010 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006769 nicotinamide metabolic process Biological Process

GO:0006805 xenobiotic metabolic process Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0019363 pyridine nucleotide biosynthetic process Biological Process

GO:0019365 pyridine nucleotide salvage Biological Process

GO:0046677 response to antibiotic Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008198 ferrous iron binding Molecular Function

GO:0008936 nicotinamidase activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

KEGG gene cross-reference

aci:ACIAD3584

ath:AT2G22570

bsu:BSU31760

mtu:Rv2043c

mtv:RVBD_2043c

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.595

Rank 1 · LXL04_014010 · OH-1004

Nucleus0.285

Rank 2 · LXL04_014010 · OH-1004

Plastid0.097

Rank 3 · LXL04_014010 · OH-1004

Cell membrane0.073

Rank 4 · LXL04_014010 · OH-1004

Mitochondrion0.072

Rank 5 · LXL04_014010 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00857.27Isochorismatase30-199 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014010	`PF00857.27`	Isochorismatase	30	199	2.6e-22	80.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S8F9`	Arabidopsis thaliana	Nicotinamidase 1	67.932%	Swiss-Prot	strong database homology

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